2020-10-22 10:22:02,101 [16696] INFO     esmvaltool.diag_scripts.shared._base,511	Starting diagnostic script script1 with configuration:
auxiliary_data_dir: /net/tropo/climphys/rlorenz/ESMVal/auxiliary_data
input_data:
  ? /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/preproc/diagnostic/pr/CMIP5_CanESM2_Amon_historical_r1i1p1_pr_2000-2002.nc
  : alias: CanESM2
    dataset: CanESM2
    diagnostic: diagnostic
    end_year: 2002
    ensemble: r1i1p1
    exp: historical
    filename: /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/preproc/diagnostic/pr/CMIP5_CanESM2_Amon_historical_r1i1p1_pr_2000-2002.nc
    frequency: mon
    institute:
    - CCCma
    long_name: Precipitation
    mip: Amon
    modeling_realm:
    - atmos
    preprocessor: preproc
    project: CMIP5
    recipe_dataset_index: 0
    short_name: pr
    standard_name: precipitation_flux
    start_year: 2000
    units: kg m-2 s-1
    variable_group: pr
input_files:
- /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/preproc/diagnostic/pr/metadata.yml
log_level: debug
output_file_type: pdf
plot_dir: /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/plots/diagnostic/script1
profile_diagnostic: false
quickplot:
  plot_type: pcolormesh
realms:
- atmos
recipe: recipe_extract_shape.yml
run_dir: /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/run/diagnostic/script1
script: script1
themes:
- phys
version: 2.1.0
work_dir: /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/work/diagnostic/script1
write_netcdf: true
write_plots: true

2020-10-22 10:22:02,102 [16696] INFO     esmvaltool.diag_scripts.shared._base,547	Creating /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/work/diagnostic/script1
2020-10-22 10:22:02,103 [16696] INFO     esmvaltool.diag_scripts.shared._base,547	Creating /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/plots/diagnostic/script1
2020-10-22 10:22:02,104 [16696] INFO     diagnostic,73	Example of how to select only CMIP5 temperature data:
[]
2020-10-22 10:22:02,104 [16696] INFO     diagnostic,77	Example of how to sort this selection by dataset:
[]
2020-10-22 10:22:02,105 [16696] INFO     diagnostic,83	Example of how to group and sort input data by variable groups from the recipe:
{'pr': [{'alias': 'CanESM2',
         'dataset': 'CanESM2',
         'diagnostic': 'diagnostic',
         'end_year': 2002,
         'ensemble': 'r1i1p1',
         'exp': 'historical',
         'filename': '/net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/preproc/diagnostic/pr/CMIP5_CanESM2_Amon_historical_r1i1p1_pr_2000-2002.nc',
         'frequency': 'mon',
         'institute': ['CCCma'],
         'long_name': 'Precipitation',
         'mip': 'Amon',
         'modeling_realm': ['atmos'],
         'preprocessor': 'preproc',
         'project': 'CMIP5',
         'recipe_dataset_index': 0,
         'short_name': 'pr',
         'standard_name': 'precipitation_flux',
         'start_year': 2000,
         'units': 'kg m-2 s-1',
         'variable_group': 'pr'}]}
2020-10-22 10:22:02,105 [16696] INFO     diagnostic,90	Processing variable pr
2020-10-22 10:22:02,105 [16696] INFO     diagnostic,92	Processing dataset CanESM2
2020-10-22 10:22:02,105 [16696] DEBUG    diagnostic,45	Loading /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/preproc/diagnostic/pr/CMIP5_CanESM2_Amon_historical_r1i1p1_pr_2000-2002.nc
2020-10-22 10:22:02,159 [16696] DEBUG    diagnostic,48	Running example computation
2020-10-22 10:22:02,162 [16696] INFO     esmvaltool.diag_scripts.shared._base,132	Saving analysis results to /net/tropo/climphys/rlorenz/ESMVal/work/recipe_extract_shape_20201022_102154/work/diagnostic/script1/CMIP5_CanESM2_Amon_historical_r1i1p1_pr_2000-2002.nc
2020-10-22 10:22:02,231 [16696] DEBUG    esmvaltool.diag_scripts.shared.plot._plot,329	Creating 'pcolormesh' plot None
Traceback (most recent call last):
  File "/home/rlorenz/ESMValTool/ESMValTool/esmvaltool/diag_scripts/examples/diagnostic.py", line 107, in <module>
    main(config)
  File "/home/rlorenz/ESMValTool/ESMValTool/esmvaltool/diag_scripts/examples/diagnostic.py", line 101, in main
    plot_diagnostic(cube, output_basename, provenance_record, cfg)
  File "/home/rlorenz/ESMValTool/ESMValTool/esmvaltool/diag_scripts/examples/diagnostic.py", line 61, in plot_diagnostic
    quickplot(cube, **cfg['quickplot'])
  File "/home/rlorenz/ESMValTool/ESMValTool/esmvaltool/diag_scripts/shared/plot/_plot.py", line 332, in quickplot
    plot_function(cube, **kwargs)
  File "/net/tropo/climphys/rlorenz/conda/envs/esmvaltool_2020/lib/python3.8/site-packages/iris/quickplot.py", line 260, in pcolormesh
    result = iplt.pcolormesh(cube, *args, **kwargs)
  File "/net/tropo/climphys/rlorenz/conda/envs/esmvaltool_2020/lib/python3.8/site-packages/iris/plot.py", line 1212, in pcolormesh
    result = _draw_2d_from_bounds('pcolormesh', cube, *args, **kwargs)
  File "/net/tropo/climphys/rlorenz/conda/envs/esmvaltool_2020/lib/python3.8/site-packages/iris/plot.py", line 373, in _draw_2d_from_bounds
    plot_defn = _get_plot_defn(cube, mode, ndims=2)
  File "/net/tropo/climphys/rlorenz/conda/envs/esmvaltool_2020/lib/python3.8/site-packages/iris/plot.py", line 148, in _get_plot_defn
    raise ValueError(msg % (ndims, cube.ndim))
ValueError: Cube must be 2-dimensional. Got 3 dimensions.