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The ERA5_freq and ERA5_name can be removed. However, I think ERA5_name gives some uesful information and I like to keep it. See this issue.
The description should include the purpose of the recipe. For example, users working with hourly/monthly era5 data do not need to run this recipe prior to their own recipe. This recipe should be considered as an example of how to write their own recipe. The current hourly diagnostic may lead to memory and disk space issues.
Monthly diagnostic including the variable zg fails with this error:
2020-10-26 08:40:49,272 UTC [3351] ERROR Failed to run fix_metadata([<iris 'Cube' of geopotential / (m**2 s**-2) (time: 12; pressure_level: 37; latitude: 721; longitude: 1440)>, <iris 'Cube' of geopotential / (m**2 s**-2) (time: 12; latitude: 721; longitude: 1440)>, <iris 'Cube' of geopotential / (m**2 s**-2) (time: 12; latitude: 721; longitude: 1440)>, <iris 'Cube' of geopotential / (m**2 s**-2) (time: 12; pressure_level: 37; latitude: 721; longitude: 1440)>], {'project': 'native6', 'dataset': 'ERA5', 'short_name': 'zg', 'mip': 'Amon', 'frequency': 'mon', 'check_level': <CheckLevels.DEFAULT: 3>})
2020-10-26 08:41:11,228 UTC [3339] INFO Maximum memory used (estimate): 5.2 GB
2020-10-26 08:41:11,229 UTC [3339] INFO Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur.
2020-10-26 08:41:11,231 UTC [3339] ERROR Program terminated abnormally, see stack trace below for more information
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/multiprocessing/pool.py", line 121, in worker
result = (True, func(*args, **kwds))
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/_task.py", line 735, in _run_task
output_files = task.run()
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/_task.py", line 242, in run
self.output_files = self._run(input_files)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/preprocessor/__init__.py", line 428, in _run
product.apply(step, self.debug)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/preprocessor/__init__.py", line 296, in apply
self.cubes = preprocess(self.cubes, step, **self.settings[step])
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/preprocessor/__init__.py", line 238, in preprocess
result.append(_run_preproc_function(function, items, settings))
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/preprocessor/__init__.py", line 224, in _run_preproc_function
return function(items, **kwargs)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/cmor/fix.py", line 107, in fix_metadata
cube_list = fix.fix_metadata(cube_list)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/cmor/_fixes/native6/era5.py", line 325, in fix_metadata
cube = self._fix_coordinates(cube)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/cmor/_fixes/native6/era5.py", line 277, in _fix_coordinates
coord = cube.coord(axis=axis)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/iris/cube.py", line 1497, in coord
raise iris.exceptions.CoordinateNotFoundError(msg)
iris.exceptions.CoordinateNotFoundError: 'Expected to find exactly 1 coordinate, but found none.'
"""
4- Hourly diagnostic including the variable orog fails with this error:
2020-10-27 10:21:32,897 UTC [27684] INFO These tasks will be executed: hourly/rename, hourly/orog
2020-10-27 10:21:32,899 UTC [27684] INFO Running 2 tasks using 2 processes
2020-10-27 10:21:32,936 UTC [27706] INFO Starting task hourly/orog in process [27706]
2020-10-27 10:21:33,033 UTC [27684] INFO Progress: 1 tasks running, 1 tasks waiting for ancestors, 0/2 done
2020-10-27 10:21:33,466 UTC [27706] ERROR Failed to run concatenate([<iris 'Cube' of surface_altitude / (m) (latitude: 721; longitude: 1440)>, <iris 'Cube' of surface_altitude / (m) (latitude: 721; longitude: 1440)>, <iris 'Cube' of surface_altitude / (m) (latitude: 721; longitude: 1440)>, <iris 'Cube' of surface_altitude / (m) (latitude: 721; longitude: 1440)>], {})
2020-10-27 10:21:33,715 UTC [27684] INFO Maximum memory used (estimate): 0.0 GB
2020-10-27 10:21:33,716 UTC [27684] INFO Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur.
2020-10-27 10:21:33,718 UTC [27684] ERROR Program terminated abnormally, see stack trace below for more information
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/preprocessor/_io.py", line 185, in concatenate
cubes = sorted(cubes, key=lambda c: c.coord("time").cell(0).point)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/esmvalcore/preprocessor/_io.py", line 185, in <lambda>
cubes = sorted(cubes, key=lambda c: c.coord("time").cell(0).point)
File "/home/fakhereh/miniconda3/envs/esmvaltool/lib/python3.7/site-packages/iris/cube.py", line 1497, in coord
raise iris.exceptions.CoordinateNotFoundError(msg)
iris.exceptions.CoordinateNotFoundError: 'Expected to find exactly 1 time coordinate, but found none.'
The text was updated successfully, but these errors were encountered:
The recipe_era5.yml has several issues:
ERA5_freq
andERA5_name
can be removed. However, I thinkERA5_name
gives some uesful information and I like to keep it. See this issue.zg
fails with this error:4- Hourly diagnostic including the variable
orog
fails with this error:The text was updated successfully, but these errors were encountered: