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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
useDynLib(evonet)
export(incidence_rate_plot)
export(infection_history_vl_cd4_plot)
export(initialize_agents)
export(initialize_evonet_misc)
export(initialize_infecteds_cd4)
export(initialize_infecteds_vl)
export(initialize_module)
export(initialize_popsumm_dynamics)
export(initialize_restart)
export(initialize_vl_cd4_list)
export(input_parameters_age_distribution)
export(input_parameters_agent_attributes)
export(input_parameters_asmr)
export(input_parameters_cd4_data)
export(input_parameters_derived)
export(input_parameters_popsumm_stats)
export(input_parameters_primary)
export(input_parameters_qaqc)
export(new_additions_fxn)
export(new_additions_fxn_both)
export(output_plots_fxn)
export(plot_age_hist)
export(plot_disc_coital_acts_history)
export(plot_end_epidemic_values)
export(plot_fxn2)
export(plot_heritability_quarters)
export(plot_network_fxn)
export(plot_relationship_duration)
export(plot_relationship_history)
export(plot_summary_timeseries)
export(plot_table_parameters)
export(plot_time_to_removal)
export(plot_time_to_removal_by_spvl)
export(plot_vl_trajectories)
export(plot_vl_trajectories_aim2)
export(plot_vl_trajectories_aim3)
export(plots_initial_diagnostic)
export(plots_popsumm)
export(plots_popsumm_all_NA_flag)
export(plots_popsumm_all_NA_plot)
export(plots_popsumm_internal)
export(plots_popsumm_mean_value)
export(plots_popsumm_mean_value_loess)
export(plots_popsumm_overlay_lines)
export(plots_popsumm_plotting)
export(plots_popsumm_ymin_ymax)
export(setup_epimodel_control_object)
export(setup_initialize_network)
export(social_2nd_line_treatment_module)
export(social_adherence)
export(social_attribute_transition_module)
export(social_coital_acts)
export(social_coital_acts_module)
export(social_condom_use)
export(social_discord_edgelist)
export(social_discord_edgelist_df)
export(social_generic_attribute_transition)
export(social_resistance_testing_module)
export(social_role_msm)
export(social_set_generic_attribute_on_nw)
export(social_set_msm_role_on_nw)
export(social_testing_diagnosis_module)
export(social_treatment_module)
export(social_treatment_module_john)
export(social_treatment_ranked)
export(social_treatment_vaccination)
export(summary_end_epidemic_values)
export(summary_evo_newick)
export(summary_misc)
export(summary_module)
export(summary_popsumm)
export(summary_popsumm_fxns)
export(summary_popsumm_generic_att_fxns)
export(summary_spvl_lineage)
export(summary_viral_lineage)
export(summary_vl_list)
export(transmission_bookkeeping_module)
export(transmission_cd4_module)
export(transmission_hill_fxn)
export(transmission_hughes_and_exp)
export(transmission_main_module)
export(utilities_annual_mortality_conversion)
export(utilities_annual_prob_conversion)
export(utilities_apportion.lr)
export(viral_initialCD4)
export(viral_lineage_fnx2)
export(viral_spvl_cat_fxn)
export(viral_update_aim3)
export(viral_update_aim3_args_list_1)
export(viral_update_aim3_args_list_2)
export(viral_update_aim3_cd4)
export(viral_update_aim3_rcpp_output)
export(viral_update_cd4_daily)
export(viral_update_cd4_diff_eqn)
export(viral_update_cd4_intial_pop)
export(viral_update_cd4_simple_diff_eqn)
export(viral_update_gamma)
export(vital_aging_module)
export(vital_births_bookkeeping_misc)
export(vital_births_bookkeeping_pop)
export(vital_births_calculate_new)
export(vital_births_module)
export(vital_death_aged_out)
export(vital_death_aids)
export(vital_death_non_aids)
export(vital_deaths_module)
export(vital_initial_age_dist)