diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index e97d8353..c239cda5 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -54,15 +54,8 @@ jobs: wget https://dalexander.github.io/admixture/binaries/admixture_linux-1.3.0.tar.gz tar -xvzf admixture_linux-1.3.0.tar.gz cd .. - #mkdir -p /home/runner/.local/bin - #cp "$PWD/admixture/dist/admixture_linux-1.3.0/admixture" "/usr/local/bin/admixture" echo "$PWD/admixture/dist/admixture_linux-1.3.0" >> "$GITHUB_PATH" - - name: Test ADMIXTURE for linux - if: matrix.config.os == 'ubuntu-latest' - run: | - echo "$PATH" - admixture --help - uses: r-lib/actions/check-r-package@v2 with: diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index cadb5b92..126befc9 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -29,6 +29,16 @@ jobs: extra-packages: any::covr, any::xml2 needs: coverage + - name: Get ADMIXTURE for linux + run: | + mkdir admixture + cd admixture + wget https://dalexander.github.io/admixture/binaries/admixture_linux-1.3.0.tar.gz + tar -xvzf admixture_linux-1.3.0.tar.gz + cd .. + echo "$PWD/admixture/dist/admixture_linux-1.3.0" >> "$GITHUB_PATH" + + - name: Test coverage run: | cov <- covr::package_coverage( diff --git a/_pkgdown.yml b/_pkgdown.yml index aa8bd9ae..57babc06 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -13,6 +13,8 @@ reference: - gt_save - gt_load - gt_get_file_names + - gt_order_loci + - gt_update_backingfile - title: "Show" desc: "Functions to view loci and genotype information stored in a `gen_tibble`." contents: @@ -22,6 +24,7 @@ reference: - show_ploidy - count_loci - augment_loci + - is_loci_table_ordered - title: "Selecting loci" desc: "Functions to select loci from a `gen_tibble`, either based on loci information, or genotype information." contents: