From 9c90d5d9ff02c704101bb7a69d269ba55bd7d58e Mon Sep 17 00:00:00 2001
From: Andrea Manica <am315@cam.ac.uk>
Date: Thu, 17 Oct 2024 14:01:04 +0100
Subject: [PATCH] typo

---
 .Rbuildignore        | 1 +
 R/q_matrix.R         | 2 +-
 _pkgdown.yml         | 4 ++--
 man/tidy.q_matrix.Rd | 2 +-
 4 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/.Rbuildignore b/.Rbuildignore
index 36411269..121042f3 100644
--- a/.Rbuildignore
+++ b/.Rbuildignore
@@ -4,3 +4,4 @@
 ^LICENSE\.md$
 ^\.github$
 pkgdown/
+_pkgdown.yml
diff --git a/R/q_matrix.R b/R/q_matrix.R
index 7daefc54..ad78c094 100644
--- a/R/q_matrix.R
+++ b/R/q_matrix.R
@@ -64,7 +64,7 @@ q_matrix <- function(x) {
 #'
 #' Takes a `q_matrix` object, which is a matrix, and returns a tidied tibble.
 #'
-#' @param x A Q matrix object (as returned by ['q_matrix']).
+#' @param x A Q matrix object (as returned by [`q_matrix`]).
 #' @param data An associated tibble (e.g. a [`gen_tibble`]), with the individuals in the same order as the data used to
 #' generate the Q matrix
 #' @param ... not currently used
diff --git a/_pkgdown.yml b/_pkgdown.yml
index 7be658c2..8d7f4cd2 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -89,7 +89,7 @@ reference:
         - augment.gt_dapc
         - autoplot.gt_dapc
         - autoplot.gt_cluster_pca
-  - title: "K-clustering"
+  - title: "K-clustering (e.g. ADMXITURE)"
     desc: "Functions for creating, tidying, and visualising q_matrix objects."
     contents:
         - q_matrix
@@ -100,7 +100,7 @@ reference:
         - distruct_colours
         - scale_fill_distruct
         - theme_distruct
-  - title: "Other analyses"
+  - title: "Other analyses (e.g. ADMIXTOOLS2, pcadapt)"
     desc: "Functions for other analyses within R."
     contents:
         - gt_extract_f2
diff --git a/man/tidy.q_matrix.Rd b/man/tidy.q_matrix.Rd
index b83ea672..a8765353 100644
--- a/man/tidy.q_matrix.Rd
+++ b/man/tidy.q_matrix.Rd
@@ -7,7 +7,7 @@
 \method{tidy}{q_matrix}(x, data, ...)
 }
 \arguments{
-\item{x}{A Q matrix object (as returned by \link{'q_matrix'}).}
+\item{x}{A Q matrix object (as returned by \code{\link{q_matrix}}).}
 
 \item{data}{An associated tibble (e.g. a \code{\link{gen_tibble}}), with the individuals in the same order as the data used to
 generate the Q matrix}