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We need a bit of clean up of names. The suggested logic is that:
'indiv' is used as a prefix for functions applied at the individual (row) level, e.g. indiv_missingness().
'loci' is used as a prefix for functions at the locus (column) level, e.g. loci_missingness().
'gt' is used for functions that apply to the whole gen_tibble, e.g. gt_pca
We need to think about functions that make pairwise comparisons (e.g. ibs, king, pairwise_pop_fst). One option is to use the prefix between_. However, this can be ambiguous, as a between_ function would return a matrix that could be n x n individuals, or m by m populations. One option is to say that between_ functions return a matrix of comparisons between individuals, and that between_pop_ is used for populations. So, we would have between_ibs or between_king and between_pop_fst.
The text was updated successfully, but these errors were encountered:
We need a bit of clean up of names. The suggested logic is that:
indiv_missingness()
.loci_missingness()
.gt_pca
We need to think about functions that make pairwise comparisons (e.g. ibs, king, pairwise_pop_fst). One option is to use the prefix
between_
. However, this can be ambiguous, as abetween_
function would return a matrix that could be n x n individuals, or m by m populations. One option is to say thatbetween_
functions return a matrix of comparisons between individuals, and thatbetween_pop_
is used for populations. So, we would havebetween_ibs
orbetween_king
andbetween_pop_fst
.The text was updated successfully, but these errors were encountered: