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"object" : "NCBIGene:3554", + "object" : "NCBIGene:11020", "object_category" : "biolink:Gene", - "predicate" : "biolink:has_participant", - "subject" : "GO:0019209", - "subject_category" : "biolink:MolecularActivity" + "predicate" : "biolink:has_part", + "subject" : "GO:0030991", + "subject_category" : "biolink:CellularComponent" }, { - "object" : "GO:1990513", + "object" : "GO:0004333", + "object_category" : "biolink:MolecularActivity", + "predicate" : "biolink:acts_upstream_of", + "subject" : "GO:0045244", + "subject_category" : "biolink:MacromolecularComplexMixin" + }, + { + "object" : "GO:0003674", + "object_category" : "biolink:MolecularActivity", + "predicate" : "biolink:participates_in", + "subject" : "xenbase:XB-GENE-480800", + "subject_category" : "biolink:ChemicalSubstance" + }, + { + "object" : "GO:0070603", "object_category" : "biolink:MacromolecularComplexMixin", "predicate" : "biolink:related_to", - "subject" : "GO:0140677", - "subject_category" : "biolink:MolecularActivity" + "subject" : "GO:0070603", + "subject_category" : "biolink:MacromolecularComplexMixin" }, { "object" : "GO:1990513", @@ -29289,2391 +10767,2531 @@ "subject_category" : "biolink:MolecularActivity" }, { - 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"subject" : "CHEBI:17499", - "subject_category" : "biolink:PhenotypicQuality" + "subject" : "NCBIGene:4734", + "subject_category" : "biolink:Gene" }, { - "object" : "GO:0003854", - "object_category" : "biolink:MolecularActivity", - "predicate" : "biolink:participates_in", - "subject" : "CHEBI:17499", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "MGI:2139535", + "object_category" : "biolink:ChemicalSubstance", + "predicate" : "biolink:related_to", + "subject" : "GO:0003674", + "subject_category" : "biolink:MolecularActivity" }, { - "object" : "GO:0003854", - "object_category" : "biolink:MolecularActivity", - "predicate" : "biolink:related_to", - "subject" : "CHEBI:17499", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "NCBIGene:54472", + "object_category" : "biolink:Gene", + "predicate" : "biolink:interacts_with", + "subject" : "UniProtKB:P01584", + "subject_category" : "biolink:ChemicalSubstance" }, { - "object" : "GO:0097190", - "object_category" : "biolink:Pathway", - 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"object" : "CHEBI:50114", - "object_category" : "biolink:PhenotypicQuality", - "predicate" : "biolink:related_to", - "subject" : "CHEBI:50114", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "GO:0070044", + "object_category" : "biolink:CellularComponent", + "predicate" : "biolink:overlaps", + "subject" : "GO:0070044", + "subject_category" : "biolink:MacromolecularComplexMixin" }, { - "object" : "CHEBI:50114", - "object_category" : "biolink:PhenotypicQuality", + "object" : "GO:0031514", + "object_category" : "biolink:CellularComponent", "predicate" : "biolink:overlaps", - "subject" : "CHEBI:50114", - "subject_category" : "biolink:PhenotypicQuality" + "subject" : "GO:0005930", + "subject_category" : "biolink:CellularComponent" }, { - "object" : "GO:0005215", + "object" : "GO:0004449", "object_category" : "biolink:MolecularActivity", - "predicate" : "biolink:related_to", - "subject" : "CHEBI:50904", - "subject_category" : "biolink:PhenotypicQuality" + "predicate" : "biolink:acts_upstream_of", + "subject" : "GO:0009361", + "subject_category" : "biolink:MacromolecularComplexMixin" }, { - "object" : "GO:0005215", - "object_category" : "biolink:MolecularActivity", - "predicate" : "biolink:participates_in", - "subject" : "CHEBI:50904", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "GO:0005930", + "object_category" : "biolink:CellularComponent", + "predicate" : "biolink:part_of", + "subject" : "MGI:1341105", + "subject_category" : "biolink:ChemicalSubstance" }, { - "object" : "GO:0005215", - "object_category" : "biolink:MolecularActivity", - "predicate" : "biolink:participates_in", - "subject" : "CHEBI:50904", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "UBERON:0001896", + "object_category" : "biolink:GrossAnatomicalStructure", + "predicate" : "biolink:overlaps", + "subject" : "GO:0042734", + "subject_category" : "biolink:CellularComponent" }, { - "object" : "GO:0005215", - "object_category" : "biolink:MolecularActivity", - "predicate" : "biolink:related_to", - "subject" : "CHEBI:50904", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "GO:0000785", + "object_category" : "biolink:CellularComponent", + "predicate" : "biolink:occurs_in", + "subject" : "GO:0000981", + "subject_category" : "biolink:MolecularActivity" }, { - "object" : "GO:0097190", - "object_category" : "biolink:Pathway", - "predicate" : "biolink:related_to", - "subject" : "CHEBI:50114", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "GO:0009986", + "object_category" : "biolink:CellularComponent", + "predicate" : "biolink:occurs_in", + "subject" : "GO:0003674", + "subject_category" : "biolink:MolecularActivity" }, { - "object" : "GO:0097190", + "object" : "GO:0008543", "object_category" : "biolink:Pathway", - "predicate" : "biolink:participates_in", - "subject" : "CHEBI:50114", - "subject_category" : "biolink:PhenotypicQuality" + "predicate" : "biolink:related_to", + "subject" : "REACTO:REACTO_R-HSA-190223", + "subject_category" : "biolink:CellularComponent" }, { - "object" : "GO:0097190", - "object_category" : "biolink:Pathway", - "predicate" : "biolink:participates_in", - "subject" : "CHEBI:50114", - "subject_category" : "biolink:PhenotypicQuality" + "object" : "CHEBI:17499", + "object_category" : "biolink:PhenotypicQuality", + "predicate" : "biolink:related_to", + "subject" : "GO:0033560", + "subject_category" : "biolink:MolecularActivity" }, { - "object" : "GO:0097190", - "object_category" : "biolink:Pathway", + "object" : "GO:0035354", + "object_category" : "biolink:MacromolecularComplexMixin", "predicate" : "biolink:related_to", - "subject" : "CHEBI:50114", - "subject_category" : "biolink:PhenotypicQuality" + "subject" : "GO:0042497", + "subject_category" : "biolink:MolecularActivity" } ], "exclude_tests" : [ diff --git a/src/main/scala/org/renci/cam/util/GenerateTestData.scala b/src/main/scala/org/renci/cam/util/GenerateTestData.scala index 599759bc..490be50e 100644 --- a/src/main/scala/org/renci/cam/util/GenerateTestData.scala +++ b/src/main/scala/org/renci/cam/util/GenerateTestData.scala @@ -235,7 +235,7 @@ object GenerateTestData extends zio.App with LazyLogging { } .runCollect - sriTestingFile = SRITestingFile("aggregator", "cam-kp", List(), results.toList) + sriTestingFile = SRITestingFile("aggregator", "cam-kp", List(), results.toSet.toList) sriTestingFileJson = sriTestingFile.asJson _ = Files.writeString(sriTestingFilePath, sriTestingFileJson.deepDropNullValues.spaces2SortKeys) } yield ({