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Software hang when dealing with large custom SNP-databases #41

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jaclew opened this issue Jan 16, 2024 · 0 comments
Open

Software hang when dealing with large custom SNP-databases #41

jaclew opened this issue Jan 16, 2024 · 0 comments

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@jaclew
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jaclew commented Jan 16, 2024

I made a database with many (>2000 SNPs for a reference) added custom SNPs which lead to the software hanging during SNP calling. I identified the hang to be due to suboptimal usage of multiprocessing Queues and believe that the Queue was filled, leading to a stalled execution. Please consider the pull request.

Pull request:
#40
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