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DESCRIPTION
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DESCRIPTION
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Package: cellpypes
Title: Cell Type Pipes for Single-Cell RNA Sequencing Data
Version: 0.2.1
Authors@R:
person(given = "Felix",
family = "Frauhammer",
role = c("aut", "cre"),
email = "felixfrauhammer@gmail.com")
Description: Annotate single-cell RNA sequencing data manually based on
marker gene thresholds.
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
cell type hierarchies.
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
features.
URL: https://github.com/FelixTheStudent/cellpypes
BugReports: https://github.com/FelixTheStudent/cellpypes/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
Suggests:
testthat (>= 3.0.0),
knitr,
rmarkdown,
Seurat,
DESeq2,
RcppAnnoy,
tibble,
SeuratObject
Config/testthat/edition: 3
Imports:
scUtils,
ggplot2,
Matrix,
rlang,
viridis,
cowplot,
dplyr,
scales,
methods,
scattermore
Depends:
R (>= 2.10)