Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

example data problem #42

Open
rosema62 opened this issue Jan 20, 2021 · 1 comment
Open

example data problem #42

rosema62 opened this issue Jan 20, 2021 · 1 comment

Comments

@rosema62
Copy link

I've just installed Enrich2 and downloaded the example data. After unzipping the data navigate in the gui to the Enrich2-Example-master directory (which exists here : /home/rosema1/Bioinfo/bin/Enrich2-master/example_data/Enrich2-Example-master) and using the file menu i open BRCA1_example.json. I then get an error message:

Failed to process config file: [Errno FASTQ file error: file 'Data/BRCA1_input_sample.fq.bz2' doesn't exist] E3 Input

I then go back to /home/rosema1/Bioinfo/bin/Enrich2-master/example_data/Enrich2-Example-master in the terminal and get the following:

$ cd /home/rosema1/Bioinfo/bin/Enrich2-master/example_data/Enrich2-Example-master
$ ls -l Data/BRCA1_input_sample.fq.bz2
-rw-rw-r-- 1 rosema1 rosema1 49713004 Sep 17 2016 Data/BRCA1_input_sample.fq.bz2

Any suggestions?

Thanks

Mark

@afrubin
Copy link
Member

afrubin commented Jan 20, 2021

The example uses relative file paths, so make sure you are starting the program from within the example directory.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants