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environment.linux.lock.yml
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channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- appdirs=1.4.3=py_1
- attrs=19.3.0=py_0
- bcftools=1.9=h68d8f2e_9
- blas=2.14=openblas
- bowtie2=2.3.5=py36he860b03_0
- bwa=0.7.17=hed695b0_7
- bzip2=1.0.8=h516909a_2
- ca-certificates=2019.11.28=hecc5488_0
- certifi=2019.11.28=py36_0
- cffi=1.13.2=py36h8022711_0
- chardet=3.0.4=py36_1003
- click=7.0=py_0
- coloredlogs=10.0=py36_1000
- colormath=3.0.0=py_2
- configargparse=0.13.0=py_1
- cryptography=2.8=py36h72c5cf5_1
- curl=7.65.3=hf8cf82a_0
- cutadapt=2.5=py36h516909a_0
- cycler=0.10.0=py_2
- datrie=0.8=py36h516909a_0
- dbus=1.13.6=he372182_0
- decorator=4.4.1=py_0
- dnaio=0.4.1=py36h516909a_0
- docutils=0.16=py36_0
- ema=0.6.2=h8b12597_1
- expat=2.2.9=he1b5a44_2
- fastqc=0.11.9=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.1=h86ecdb6_1001
- freebayes=1.3.2=py36hc088bd4_0
- freetype=2.10.0=he983fc9_1
- future=0.18.2=py36_0
- gatk4=4.1.4.1=1
- gettext=0.19.8.1=hc5be6a0_1002
- gitdb2=2.0.6=py_0
- gitpython=3.0.5=py_0
- glib=2.58.3=py36h6f030ca_1002
- gsl=2.5=h294904e_1
- gst-plugins-base=1.14.5=h0935bb2_1
- gstreamer=1.14.5=h36ae1b5_1
- hapcut2=1.2=hed50d52_0
- htslib=1.9=h4da6232_3
- humanfriendly=4.18=py36_1
- icu=64.2=he1b5a44_1
- idna=2.8=py36_1000
- importlib_metadata=1.5.0=py36_0
- importlib_resources=1.0.2=py36_1000
- inflect=4.0.0=py36_1
- ipython_genutils=0.2.0=py_1
- jaraco.itertools=5.0.0=py_0
- jinja2=2.11.1=py_0
- jpeg=9c=h14c3975_1001
- jsonschema=3.2.0=py36_0
- jupyter_core=4.6.1=py36_0
- kiwisolver=1.1.0=py36hc9558a2_0
- krb5=1.16.4=h2fd8d38_0
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libclang=9.0.1=default_hde54327_0
- libcurl=7.65.3=hda55be3_0
- libdeflate=1.5=h516909a_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.2.0=h24d8f2e_2
- libgfortran-ng=7.3.0=hdf63c60_5
- libgomp=9.2.0=h24d8f2e_2
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=14_openblas
- liblapacke=3.8.0=14_openblas
- libllvm9=9.0.1=hc9558a2_0
- libopenblas=0.3.7=h5ec1e0e_6
- libpng=1.6.37=hed695b0_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxkbcommon=0.9.1=hebb1f50_0
- libxml2=2.9.10=hee79883_0
- lzstring=1.0.4=py_1001
- markdown=3.1.1=py_0
- markupsafe=1.1.1=py36h516909a_0
- matplotlib=3.1.1=py36_2
- matplotlib-base=3.1.1=py36h250f245_2
- minimap2=2.17=h8b12597_1
- more-itertools=8.2.0=py_0
- multiqc=1.8=py_1
- nbformat=5.0.4=py_0
- ncurses=6.1=hf484d3e_1002
- networkx=2.2=py_1
- nomkl=3.0=0
- nspr=4.24=he1b5a44_0
- nss=3.47=he751ad9_0
- numpy=1.17.5=py36h95a1406_0
- openjdk=8.0.192=h516909a_1004
- openssl=1.1.1d=h516909a_0
- pandas=1.0.0=py36hb3f55d8_0
- parallel=20200122=0
- pcre=8.43=he1b5a44_0
- perl=5.26.2=h516909a_1006
- pigz=2.3.4=0
- pip=20.0.2=py36_1
- psutil=5.6.7=py36h516909a_0
- pthread-stubs=0.4=h14c3975_1001
- pycparser=2.19=py36_1
- pyopenssl=19.1.0=py36_0
- pyparsing=2.4.6=py_0
- pyqt=5.12.3=py36hcca6a23_1
- pyrsistent=0.15.7=py36h516909a_0
- pysam=0.15.4=py36hbcae180_0
- pysocks=1.7.1=py36_0
- python=3.6.7=h357f687_1006
- python-dateutil=2.8.1=py_0
- pytz=2019.3=py_0
- pyyaml=5.3=py36h516909a_0
- qt=5.12.5=hd8c4c69_1
- ratelimiter=1.2.0=py36_1000
- readline=8.0=hf8c457e_0
- requests=2.22.0=py36_1
- ruamel.yaml=0.16.6=py36h516909a_0
- ruamel.yaml.clib=0.2.0=py36h516909a_0
- sambamba=0.6.6=2
- samblaster=0.1.24=hc9558a2_3
- samtools=1.9=h10a08f8_12
- setuptools=45.1.0=py36_0
- simplejson=3.17.0=py36h516909a_0
- six=1.14.0=py36_0
- smmap2=2.0.5=py_0
- snakemake-minimal=5.10.0=py_0
- spectra=0.0.11=py_1
- sqlite=3.30.1=hcee41ef_0
- starcode=1.3=h14c3975_1
- tbb=2019.9=hc9558a2_1
- tk=8.6.10=hed695b0_0
- toposort=1.5=py_3
- tornado=6.0.3=py36h516909a_0
- tqdm=4.42.0=py_0
- traitlets=4.3.3=py36_0
- urllib3=1.25.7=py36_0
- vcflib=1.0.0_rc2=h56106d0_2
- wheel=0.34.2=py36_0
- wrapt=1.11.2=py36h516909a_0
- xopen=0.8.4=py36_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xz=5.2.4=h14c3975_1001
- yaml=0.2.2=h516909a_1
- zipp=2.1.0=py_0
- zlib=1.2.11=h516909a_1006
- pip:
- pyqt5-sip==4.19.18
- pyqtwebengine==5.12.1