I can not use the plots

[Roanol]

Describe the bug

when trying to plot it raises: TypeError("Instance and class checks can only be used with"
TypeError: Instance and class checks can only be used with @runtime_checkable protocols

To Reproduce

any of the examples

from skfda import datasets
from skfda.exploratory.depth import ModifiedBandDepth, IntegratedDepth
from skfda.exploratory.visualization import Boxplot

import matplotlib.pyplot as plt
import numpy as np

X, y = datasets.fetch_weather(return_X_y=True, as_frame=True)
fd = X.iloc[:, 0].values
fd_temperatures = fd.coordinates[0]

colormap = plt.cm.get_cmap('seismic')
label_names = y.values.categories
nlabels = len(label_names)
label_colors = colormap(np.arange(nlabels) / (nlabels - 1))

fd_temperatures.plot(group=y.values.codes,
group_colors=label_colors,
group_names=label_names)

Expected behavior

Ploting something

Version information

• OS: Windows 10
• Python 3.8.10
• scikit-fda version: both scikit-fda 0.8.1and develop branch

1. fdasrsf==2.4.1
2. findiff==0.9.2
3. fonttools==4.39.4
4. matplotlib==3.7.1
5. multimethod==1.9.1
6. numpy==1.24.3
7. pandas==2.0.2
8. rdata==0.9
9. scikit-datasets==0.2.2
10. scikit-learn==1.2.2
11. scipy==1.10.1
12. setuptools = 67.8.0

Additional context
Add any other context about the problem here.

[vnmabus]

Please, copy the stack trace of the exception here for diagnosing the problem.

[Roanol]

Traceback (most recent call last):
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\interactiveshell.py", line 3508, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "C:\Users\ANDRES OLIVERO\AppData\Local\Temp\ipykernel_25752\2989687894.py", line 1, in
fd.scatter(s=0.5)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\skfda\representation\grid.py", line 897, in scatter
return ScatterPlot(self, *args, **kwargs).plot()
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\skfda\exploratory\visualization_baseplot.py", line 85, in plot
fig, axes = self._set_figure_and_axes(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\skfda\exploratory\visualization_baseplot.py", line 130, in _set_figure_and_axes
fig, axes = _set_figure_layout(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\skfda\exploratory\visualization_utils.py", line 216, in _set_figure_layout
fig.add_subplot(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\figure.py", line 757, in add_subplot
ax = projection_class(self, *args, **pkw)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axes_base.py", line 683, in init
self.clear()
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axes_base.py", line 1395, in clear
self.__clear()
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axes_base.py", line 1312, in __clear
self.grid(False) # Disable grid on init to use rcParameter
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axes_base.py", line 3194, in grid
self.xaxis.grid(visible, which=which, **kwargs)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 1660, in grid
self.set_tick_params(which='major', **gridkw)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 947, in set_tick_params
for tick in self.majorTicks:
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 594, in get
tick = instance._get_tick(major=True)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 1551, in _get_tick
return self._tick_class(self.axes, 0, major=major, **tick_kw)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 417, in init
super().init(*args, **kwargs)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 183, in init
self._apply_tickdir(tickdir)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\axis.py", line 452, in _apply_tickdir
self.tick1line.set_marker(mark1)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\lines.py", line 1193, in set_marker
self._marker = MarkerStyle(marker, self._marker.get_fillstyle())
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\markers.py", line 272, in init
self._set_marker(marker)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\matplotlib\markers.py", line 347, in _set_marker
elif (isinstance(marker, Sized) and len(marker) in (2, 3) and
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\abc.py", line 98, in instancecheck
return _abc_instancecheck(cls, instance)
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\abc.py", line 102, in subclasscheck
return _abc_subclasscheck(cls, subclass)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\typing_extensions.py", line 583, in subclasscheck
return super().subclasscheck(other)
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\abc.py", line 102, in subclasscheck
return _abc_subclasscheck(cls, subclass)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\typing_extensions.py", line 639, in _proto_hook
raise TypeError("Instance and class checks can only be used with"
TypeError: Instance and class checks can only be used with @runtime_checkable protocols

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\interactiveshell.py", line 2105, in showtraceback
stb = self.InteractiveTB.structured_traceback(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\ultratb.py", line 1396, in structured_traceback
return FormattedTB.structured_traceback(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\ultratb.py", line 1287, in structured_traceback
return VerboseTB.structured_traceback(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\ultratb.py", line 1140, in structured_traceback
formatted_exception = self.format_exception_as_a_whole(etype, evalue, etb, number_of_lines_of_context,
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\ultratb.py", line 1055, in format_exception_as_a_whole
frames.append(self.format_record(record))
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\ultratb.py", line 955, in format_record
frame_info.lines, Colors, self.has_colors, lvals
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\IPython\core\ultratb.py", line 778, in lines
return self._sd.lines
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\stack_data\utils.py", line 144, in cached_property_wrapper
value = obj.dict[self.func.name] = self.func(obj)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\stack_data\core.py", line 734, in lines
pieces = self.included_pieces
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\stack_data\utils.py", line 144, in cached_property_wrapper
value = obj.dict[self.func.name] = self.func(obj)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\stack_data\core.py", line 681, in included_pieces
pos = scope_pieces.index(self.executing_piece)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\stack_data\utils.py", line 144, in cached_property_wrapper
value = obj.dict[self.func.name] = self.func(obj)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\stack_data\core.py", line 660, in executing_piece
return only(
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\executing\executing.py", line 182, in only
if isinstance(it, Sized):
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\typing.py", line 769, in instancecheck
return self.subclasscheck(type(obj))
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\typing.py", line 774, in subclasscheck
return issubclass(cls, self.origin)
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\abc.py", line 102, in subclasscheck
return _abc_subclasscheck(cls, subclass)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\typing_extensions.py", line 583, in subclasscheck
return super().subclasscheck(other)
File "C:\Users\ANDRES OLIVERO\AppData\Local\Programs\Python\Python38\lib\abc.py", line 102, in subclasscheck
return _abc_subclasscheck(cls, subclass)
File "c:\Users\ANDRES OLIVERO\Documents\Repos\Environments\functional_analysis\lib\site-packages\typing_extensions.py", line 639, in _proto_hook
raise TypeError("Instance and class checks can only be used with"
TypeError: Instance and class checks can only be used with @runtime_checkable protocols

[Roanol]

As you can see its in any kind of plot

[vnmabus]

What is the version of the typing_extensions package?

[Roanol]

typing_extensions==4.6.2

[vnmabus]

I was able to reproduce it and I am trying to solve this. As a stopgap measure you can downgrade that package to version 4.3, which worked well.

[Roanol]

thanks!

[vnmabus]

I traced this to a bug in the module typing_extensions (python/typing_extensions#207), which in turn was caused by copying buggy behavior from Python 3.11 (python/cpython#105144).

The authors of typing_extensions have updated their package to version 4.6.3, which should solve this issue. Please, tell me if that works for you.

[gedeck]

I came across the same issue and can confirm that upgrading typing-extensions to the latest version solves issue.

[vnmabus]

I will close the issue then, since it seems to be solved.