-
Notifications
You must be signed in to change notification settings - Fork 0
/
environment.yml
306 lines (306 loc) · 9.8 KB
/
environment.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
name: atac_rna_processing
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.8=h166bdaf_0
- anyio=3.6.2=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h5764c6d_3
- arrow-cpp=10.0.1=h3e2b116_3_cpu
- asttokens=2.2.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=22.2.0=pyh71513ae_0
- autopep8=2.0.1=pyhd8ed1ab_0
- aws-c-auth=0.6.21=h774e2f3_1
- aws-c-cal=0.5.20=hd3b2fe5_3
- aws-c-common=0.8.5=h166bdaf_0
- aws-c-compression=0.2.16=hf5f93bc_0
- aws-c-event-stream=0.2.17=h52dae97_0
- aws-c-http=0.6.29=hf21410f_0
- aws-c-io=0.13.11=h4f448d1_2
- aws-c-mqtt=0.7.13=hefb3e95_10
- aws-c-s3=0.2.1=h2b8044a_2
- aws-c-sdkutils=0.1.7=hf5f93bc_0
- aws-checksums=0.1.14=h6027aba_0
- aws-crt-cpp=0.18.16=ha7c8eef_6
- aws-sdk-cpp=1.9.379=h56135f1_7
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.1=pyha770c72_0
- bedtools=2.30.0=h468198e_3
- biopython=1.80=py310h5764c6d_0
- bleach=5.0.1=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.12.7=ha878542_0
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- comm=0.1.2=pyhd8ed1ab_0
- contourpy=1.0.7=py310hdf3cbec_0
- cryptography=39.0.0=py310h65dfdc0_0
- cycler=0.11.0=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.6.5=py310heca2aa9_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- et_xmlfile=1.0.1=py_1001
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fftw=3.3.10=nompi_hf0379b8_106
- flit-core=3.8.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py310h5764c6d_1
- freetype=2.12.1=hca18f0e_1
- gettext=0.21.1=h27087fc_0
- gflags=2.2.2=he1b5a44_1004
- ghostscript=9.54.0=h27087fc_2
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- glog=0.6.0=h6f12383_0
- gst-plugins-base=1.21.3=h4243ec0_1
- gstreamer=1.21.3=h25f0c4b_1
- gstreamer-orc=0.4.33=h166bdaf_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib_resources=5.10.2=pyhd8ed1ab_0
- ipykernel=6.20.1=pyh210e3f2_0
- ipython=8.8.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.0.4=pyhd8ed1ab_0
- jack=1.9.21=h583fa2b_2
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jpeg=9e=h166bdaf_2
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter=1.0.0=py310hff52083_8
- jupyter_client=7.4.8=pyhd8ed1ab_0
- jupyter_console=6.4.4=pyhd8ed1ab_0
- jupyter_core=5.1.3=py310hff52083_0
- jupyter_events=0.6.2=pyhd8ed1ab_0
- jupyter_server=2.0.6=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.5=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.20.1=hf9c8cef_0
- lame=3.100=h166bdaf_1003
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=4.0.0=h27087fc_0
- libabseil=20220623.0=cxx17_h05df665_6
- libarrow=10.0.1=h3871441_3_cpu
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcap=2.66=ha37c62d_0
- libcblas=3.9.0=16_linux64_openblas
- libclang=15.0.6=default_h2e3cab8_0
- libclang13=15.0.6=default_h3a83d3e_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h36d4200_3
- libcurl=7.87.0=h6312ad2_0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libflac=1.4.2=h27087fc_0
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libgoogle-cloud=2.5.0=h5d50b59_1
- libgpg-error=1.46=h620e276_0
- libgrpc=1.51.1=h05bd8bd_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.4=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libllvm15=15.0.6=h63197d8_0
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.1=h2baec63_3
- libprotobuf=3.21.12=h3eb15da_0
- libsndfile=1.2.0=hb75c966_0
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=252=h2a991cd_0
- libthrift=0.16.0=h491838f_2
- libtiff=4.4.0=h0e0dad5_3
- libtool=2.4.7=h27087fc_0
- libudev1=252=h166bdaf_0
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.3=h9c3ff4c_1
- markupsafe=2.1.1=py310h5764c6d_2
- matplotlib-base=3.6.2=py310h8d5ebf3_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.4=pyhd8ed1ab_0
- mpg123=1.31.1=h27087fc_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.31=haf5c9bc_0
- mysql-connector-c=6.1.6=0
- mysql-libs=8.0.31=h28c427c_0
- natsort=8.2.0=pyhd8ed1ab_0
- nbclassic=0.4.8=pyhd8ed1ab_0
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert=7.2.7=pyhd8ed1ab_0
- nbconvert-core=7.2.7=pyhd8ed1ab_0
- nbconvert-pandoc=7.2.7=pyhd8ed1ab_0
- nbformat=5.7.1=pyhd8ed1ab_0
- ncls=0.0.65=py310h1425a21_1
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- notebook=6.5.2=pyha770c72_1
- notebook-shim=0.2.2=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.82=he02c5a1_0
- numpy=1.23.1=py310h53a5b5f_0
- openjpeg=2.5.0=h7d73246_1
- openpyxl=3.0.10=py310h5764c6d_2
- openssl=1.1.1s=h0b41bf4_1
- orc=1.8.1=hfdbbad2_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.2=py310h9b08913_2
- pandoc=2.19.2=h32600fe_1
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parallel=20221122=ha770c72_0
- parquet-cpp=1.5.1=2
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=2_h7f98852_perl5
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.2.0=py310h454ad03_3
- pip=22.3.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=2.6.2=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.6.0=pyhd8ed1ab_0
- prometheus_client=0.15.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.36=pyha770c72_0
- prompt_toolkit=3.0.36=hd8ed1ab_0
- psutil=5.9.4=py310h5764c6d_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=16.1=h4ab2085_1
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyarrow=10.0.1=py310hf2f6370_3_cpu
- pycodestyle=2.10.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyfaidx=0.7.1=pyh5e36f6f_0
- pygments=2.14.0=pyhd8ed1ab_0
- pyliftover=0.4=py_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310h29803b5_2
- pyqt5-sip=12.11.0=py310hd8f1fbe_2
- pyranges=0.0.120=pyh7cba7a3_0
- pyrle=0.0.35=py310h1425a21_1
- pyrsistent=0.19.3=py310h1fa729e_0
- pysam=0.20.0=py310hff46b53_0
- pysocks=1.7.1=pyha2e5f31_6
- pytabix=0.1=py310hc8f18ef_2
- python=3.10.8=h257c98d_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python-json-logger=2.0.4=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2022.7=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- pyyaml=6.0=py310h5764c6d_5
- pyzmq=24.0.1=py310h330234f_1
- qt-main=5.15.6=h62441b5_5
- qtconsole=5.4.0=pyhd8ed1ab_0
- qtconsole-base=5.4.0=pyha770c72_0
- qtpy=2.3.0=pyhd8ed1ab_0
- re2=2022.06.01=h27087fc_1
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- s2n=1.3.30=hae46d1a_0
- scipy=1.10.0=py310h8deb116_0
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- seqlogo=5.29.8=py_0
- setuptools=65.6.3=pyhd8ed1ab_0
- sip=6.7.5=py310hd8f1fbe_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_2
- sniffio=1.3.0=pyhd8ed1ab_0
- sorted_nearest=0.0.37=py310h1425a21_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.5=py310hde88566_2
- tabulate=0.9.0=pyhd8ed1ab_1
- terminado=0.17.1=pyh41d4057_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.2=py310h5764c6d_1
- traitlets=5.8.1=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- ucsc-liftover=357=0
- unicodedata2=15.0.0=py310h5764c6d_0
- urllib3=1.26.14=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- weblogo=3.7.12=pyhd8ed1ab_0
- websocket-client=1.4.2=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- widgetsnbextension=4.0.5=pyhd8ed1ab_0
- xcb-util=0.4.0=h516909a_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h516909a_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h516909a_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.11.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
prefix: /home/xf2217/mambaforge-pypy3/envs/atac_rna_processing