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# Copyright (c) 2003-2022 Broad Institute, Inc., Massachusetts Institute of Technology, and Regents of the University of California. All rights reserved.
#GSEALeadingEdgeReport
JVMLevel=11
LSID=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00358\:999999999
author=Aravind Subramanian, Broad Institute
commandLine=/opt/gsea/GSEA_4.3.2/gsea-cli.sh LeadingEdgeTool -enrichment_zip <enrichment.result.zip.file> <gene.sets> <output.file.name> -imgFormat <image.format> <alt.delim> --extraPlots=<create.lev.plots> -dev_mode <dev.mode> -zip_report <create.zip> -run_as_genepattern true
cpuType=any
taskDoc=doc.html
description=Gene Set Enrichment Analysis
fileFormat=
language=Java
name=GSEALeadingEdgeReport
os=any
job.docker.image=genepattern/gsea_4.3.2\:0.1
p1_MODE=IN
p1_TYPE=FILE
p1_default_value=
p1_description=Enrichment result file in ZIP format
p1_fileFormat=zip
p1_flag=
p1_name=enrichment.result.zip.file
p1_optional=
p1_prefix=
p1_prefix_when_specified=
p1_type=java.io.File
p1_value=
p2_MODE=
p2_TYPE=TEXT
p2_default_value=
p2_description=Comma-separated list of Gene Sets to choose for the report; leave blank for all
p2_fileFormat=
p2_flag=
p2_name=gene.sets
p2_optional=on
p2_prefix=
p2_prefix_when_specified=--gsets=
p2_type=java.lang.String
p2_value=
p3_MODE=
p3_TYPE=TEXT
p3_default_value=<enrichment.result.zip.file_basename>.report.zip
p3_description=Name of the output file. Note that this only applies if create.zip=true.
p3_fileFormat=
p3_flag=
p3_name=output.file.name
p3_optional=on
p3_prefix=
p3_prefix_when_specified=-output_file_name
p3_type=java.lang.String
p3_value=
p4_MODE=
p4_TYPE=TEXT
p4_default_value=png
p4_description=
p4_fileFormat=
p4_flag=
p4_name=image.format
p4_optional=
p4_prefix=
p4_prefix_when_specified=
p4_type=java.lang.String
p4_value=png;svg;jpeg
p5_MODE=
p5_TYPE=TEXT
p5_default_value=
p5_description=Optional alternate delimiter character for gene set names instead of comma
p5_fileFormat=
p5_flag=
p5_name=alt.delim
p5_optional=on
p5_prefix=
p5_prefix_when_specified=--altDelim=
p5_type=java.lang.String
p5_value=
p6_default_value=false
p6_description=Create the LEV plots; this is useful mostly for development and debugging
p6_fileFormat=
p6_flag=
p6_name=create.lev.plots
p6_optional=
p6_prefix=
p6_prefix_when_specified=
p6_type=java.lang.String
p6_value=false;true
p7_MODE=
p7_TYPE=TEXT
p7_default_value=true
p7_description=Create a ZIP bundle of the output files.
p7_fileFormat=
p7_flag=
p7_name=create.zip
p7_optional=
p7_prefix=
p7_prefix_when_specified=
p7_type=java.lang.String
p7_value=false;true
p8_MODE=
p8_TYPE=TEXT
p8_default_value=false
p8_description=Enable developer mode.
p8_fileFormat=
p8_flag=
p8_name=dev.mode
p8_optional=
p8_prefix=
p8_prefix_when_specified=
p8_type=java.lang.String
p8_value=false;true
pipelineModel=
privacy=public
quality=development
requiredPatchLSIDs=
requiredPatchURLs=
serializedModel=
taskType=Gene List Selection
categories=beta;gsea
userid=eby@broadinstitute.org
version=Development revision with GSEA v4.3.x code.