Dockerfile

FROM nvidia/cuda:9.0-cudnn7-runtime-ubuntu16.04

# Use a fixed apt-get repo to stop intermittent failures due to flaky httpredir connections,
# as described by Lionel Chan at http://stackoverflow.com/a/37426929/5881346
RUN sed -i "s/httpredir.debian.org/debian.uchicago.edu/" /etc/apt/sources.list && \
    apt-get update && apt-get install -y --no-install-recommends apt-utils && \
    apt-get update && apt-get install -y build-essential && \
    apt-get update --fix-missing && apt-get install -y wget bzip2 ca-certificates \
    libglib2.0-0 libxext6 libsm6 libxrender1 \
    git mercurial subversion zip unzip

# install Anaconda3
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8

RUN echo 'export PATH=/opt/conda/bin:$PATH' > /etc/profile.d/conda.sh && \
    wget --quiet https://repo.continuum.io/archive/Anaconda3-5.0.1-Linux-x86_64.sh -O ~/anaconda.sh && \
    /bin/bash ~/anaconda.sh -b -p /opt/conda && \
    rm ~/anaconda.sh && \
    apt-get install -y curl grep sed dpkg && \
    TINI_VERSION=`curl https://github.com/krallin/tini/releases/latest | grep -o "/v.*\"" | sed 's:^..\(.*\).$:\1:'` && \
    curl -L "https://github.com/krallin/tini/releases/download/v${TINI_VERSION}/tini_${TINI_VERSION}.deb" > tini.deb && \
    dpkg -i tini.deb && \
    rm tini.deb && \
    apt-get clean

ENV PATH /opt/conda/bin:$PATH

RUN apt-get update && apt-get install -y libglu1 vim && pip install Cython tensorflow==1.8.1 keras==2.2.1 \
    h5py matplotlib pandas pylint scikit-image scikit-learn scipy seaborn Shapely tqdm opencv-python


WORKDIR /work

# copy entire directory where docker file is into docker container at /work
COPY . /work/

RUN pip install -e .