The American Gut App

This little app will allow you to find similar individuals in the American Gut dataset based on your proportion of Bacteroidetes and Firmicutes.

Installation

The App uses dash. You can install all dependencies with conda.

conda install dash dash-daq pandas

If you want to run the beta diversity calculation (already provided pre-computed) you also need scikit-bio.

conda install -c conda-forge scikit-bio

To run the app use any terminal and enter the directory of the app. Now run

python app.py

On Windows you can do that with the conda terminal.

You can play with the app online by clicking on this link.