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I recently ran into the same issue that some genes get removed when importing data using the import10xFeatureMatrix function. I had found this github-issue and tried again using the 'features' argument. However, I get the error that it is an unused argument.
I have installed the latest version of ArchR but the argument does not seem to be available in the function. I have also checked the R/MultiModal.R code but the argument is not specified in the code anymore. Is there another way to provide a GRanges object to prevent that genes get removed when reading in data using import10XFeatureMatrix?
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Dear ArchR-Team,
This concerns the following issue: #564
I recently ran into the same issue that some genes get removed when importing data using the import10xFeatureMatrix function. I had found this github-issue and tried again using the 'features' argument. However, I get the error that it is an unused argument.
I have installed the latest version of ArchR but the argument does not seem to be available in the function. I have also checked the R/MultiModal.R code but the argument is not specified in the code anymore. Is there another way to provide a GRanges object to prevent that genes get removed when reading in data using import10XFeatureMatrix?
Thanks in advance!
Jolien
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