bulkEpigenomics.def

Bootstrap: docker

From: continuumio/miniconda3

%environment
  export PATH=/opt/conda/bin/
  export LD_LIBRARY_PATH="/usr/lib/htslib-1.6/"
  export SINGULARITY_SHELL=/bin/bash
 
  
%files
    /media/pprompsy/Depic_bioinfo_1/InstitutCurie/Documents/Data/Singularity/Environments/bulk_Epigenomics/packed_environment.tar.gz /root/packed_environment.tar.gz
    /home/pprompsy/htslib-1.6/ /usr/lib/htslib-1.6
%post
    tar xvzf /root/packed_environment.tar.gz -C /opt/conda
    conda-unpack
    rm /root/packed_environment.tar.gz


%runscript 
	echo "You are in bulkEpigenomics container"