Python error in endMask.sh

[MikeAxtell]

Hi Michael, sorry to spam you with issues (I have a few others to post momentarily), and thanks for responding so fast to the ones from the other day. This pipeline looks like it will be very helpful.

When running endMask.sh on the example data, I found some python error messages in the output:

Traceback (most recent call last):
File "/storage/home/mja18/work/nanoPARE/scripts/python_scripts/bedgraph_dominant_transcripts.py", line 227, in
parallel=False
File "/storage/home/mja18/work/nanoPARE/scripts/python_scripts/bedgraph_dominant_transcripts.py", line 147, in write_bedgraph_from_dict
parallel = False
File "/storage/home/mja18/work/nanoPARE/scripts/python_scripts/bedgraph_dominant_transcripts.py", line 71, in generate_bedgraph_lines
if prevcount > 0:
TypeError: '>' not supported between instances of 'NoneType' and 'int'

Is this another case of python2 v python3 (I'm running python 3)? There were, however, output files in the results/ directory.