Bump Invenio packages to latest supporting SQLAlchemy 1.4 #3814
Workflow file for this run
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| # -*- coding: utf-8 -*- | |
| # | |
| # This file is part of HEPData. | |
| # Copyright (C) 2020 CERN. | |
| # | |
| # HEPData is free software; you can redistribute it | |
| # and/or modify it under the terms of the GNU General Public License as | |
| # published by the Free Software Foundation; either version 2 of the | |
| # License, or (at your option) any later version. | |
| # | |
| # HEPData is distributed in the hope that it will be | |
| # useful, but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| # General Public License for more details. | |
| # | |
| # You should have received a copy of the GNU General Public License | |
| # along with HEPData; if not, write to the | |
| # Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, | |
| # MA 02111-1307, USA. | |
| # | |
| # In applying this license, CERN does not | |
| # waive the privileges and immunities granted to it by virtue of its status | |
| # as an Intergovernmental Organization or submit itself to any jurisdiction. | |
| name: Continuous Integration | |
| on: | |
| push: | |
| pull_request: | |
| branches: [ main ] | |
| release: | |
| types: [ published ] | |
| schedule: | |
| - cron: '35 1 * * *' | |
| concurrency: | |
| group: ${{github.event_name}}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| permissions: write-all | |
| env: | |
| node-version: '18' | |
| strategy: | |
| matrix: | |
| postgres-version: [ 14 ] | |
| os-version: [ '2.11.0' ] | |
| python-version: [ '3.9' ] | |
| # Service containers to run with `runner-job` | |
| services: | |
| postgres: | |
| image: postgres:${{ matrix.postgres-version }} | |
| # Provide the password for postgres | |
| env: | |
| POSTGRES_USER: hepdata | |
| POSTGRES_PASSWORD: hepdata | |
| POSTGRES_DB: hepdata_test | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| redis: | |
| image: redis | |
| ports: | |
| - "6379:6379" | |
| opensearch: | |
| image: opensearchproject/opensearch:${{ matrix.os-version }} | |
| env: | |
| node.name: os01 | |
| cluster.name: hepdata | |
| cluster.initial_master_nodes: os01 | |
| OPENSEARCH_JAVA_OPTS: -Xms512m -Xmx512m | |
| plugins.security.disabled: true | |
| ports: | |
| - "9200:9200" | |
| - "9600:9600" | |
| steps: | |
| # Services are not currently supported by act (https://github.com/nektos/act#services) | |
| - name: Set up services for act | |
| if: ${{ env.ACT }} | |
| run: | | |
| docker run --name act-postgres -e POSTGRES_USER=hepdata -e POSTGRES_PASSWORD=hepdata -e POSTGRES_DB=hepdata_test -p 5432:5432 --rm -d postgres:${{ matrix.postgres-version }} | |
| docker run --name act-redis --rm -d -p 6379:6379 redis | |
| docker run --name act-opensearch --rm -d -p 9200:9200 -p 9600:9600 -e "discovery.type=single-node" -e "plugins.security.disabled=true" opensearchproject/opensearch:${{ matrix.os-version }} | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up node | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: ${{ env.node-version }} | |
| - name: Cache pip modules | |
| uses: actions/cache@v4 | |
| if: ${{ !env.ACT }} | |
| env: | |
| cache-name: cache-pip-modules | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-test-${{ env.cache-name }}- | |
| - name: Cache node modules | |
| uses: actions/cache@v4 | |
| if: ${{ !env.ACT }} | |
| env: | |
| cache-name: cache-node-modules | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/bundles.py') }} | |
| restore-keys: | | |
| ${{ runner.os }}-test-${{ env.cache-name }}- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools py | |
| python -m pip install twine wheel coveralls requirements-builder | |
| python -m pip install --force-reinstall -r requirements.txt | |
| python -m pip install -e .[tests] | |
| - name: Initialise hepdata | |
| run: | | |
| hepdata db init | |
| hepdata db create | |
| hepdata utils reindex -rc True | |
| - name: Setup npm and build assets | |
| run: | | |
| hepdata collect -v | |
| hepdata webpack buildall | |
| cp hepdata/config_local.gh.py hepdata/config_local.py | |
| - name: Run tests | |
| env: | |
| COVERAGE_FILE: '.coverage_func' | |
| run: | | |
| py.test -vv tests/*_test.py | |
| - name: Setup Sauce Connect | |
| uses: saucelabs/sauce-connect-action@v2 | |
| if: startsWith(matrix.python-version, '3.9') | |
| with: | |
| username: ${{ secrets.SAUCE_USERNAME }} | |
| accessKey: ${{ secrets.SAUCE_ACCESS_KEY }} | |
| region: eu-central | |
| tunnelName: ${{ github.run_id }} | |
| scVersion: 4.9.1 | |
| verbose: true | |
| - name: Run end-to-end tests | |
| if: startsWith(matrix.python-version, '3.9') | |
| env: | |
| SAUCE_USERNAME: ${{ secrets.SAUCE_USERNAME }} | |
| SAUCE_ACCESS_KEY: ${{ secrets.SAUCE_ACCESS_KEY }} | |
| COVERAGE_FILE: '.coverage_e2e' | |
| run: | | |
| if [[ -n ${{ secrets.SAUCE_USERNAME }} && -n ${{ secrets.SAUCE_ACCESS_KEY}} ]]; then py.test -vv tests/e2e; fi | |
| - name: Run coveralls | |
| if: ${{ startsWith(matrix.python-version, '3.9') && !env.ACT }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_SERVICE_NAME: github | |
| run: | | |
| coverage combine .coverage_func .coverage_e2e | |
| coveralls | |
| - name: Build docs | |
| run: | | |
| python -m pip install -e .[docs] | |
| cd docs && make html | |
| - uses: actions/upload-artifact@v4 | |
| if: ${{ failure() && !env.ACT }} | |
| with: | |
| name: sauce-connect-log | |
| path: ${{ env.SAUCE_CONNECT_DIR_IN_HOST }}/sauce-connect.log | |
| - name: Stop service containers for act | |
| if: ${{ always() && env.ACT }} | |
| run: | | |
| docker stop act-postgres act-redis act-opensearch | |
| deploy: | |
| needs: test | |
| if: contains(github.ref, 'main') || github.event_name == 'release' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Deploy to DockerHub | |
| env: | |
| CI_TAG: ${{ github.event.release.tag_name }} | |
| DOCKERHUB_USER: ${{ secrets.DOCKERHUB_USER }} | |
| DOCKERHUB_TOKEN: ${{ secrets.DOCKERHUB_TOKEN }} | |
| run: | | |
| ./build-and-deploy.sh |