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upgrading longphase to 1.7.3 #321

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signalbox2 opened this issue Jul 17, 2024 · 2 comments
Closed

upgrading longphase to 1.7.3 #321

signalbox2 opened this issue Jul 17, 2024 · 2 comments
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enhancement New feature or request

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@signalbox2
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There is a bug in longphase 1.7 that causes an error on reading FASTA files. For example:

reading reference ... [E::fai_load3_core] Failed to open FASTA file

This has been fixed in longphase 1.7.3:

https://github.com/twolinin/longphase/issues/74

Please can you update longphase in Clair3? We are using ClairS but presumably if fixed in Clair3 it will be picked up in the conda clair3-illumina package used by ClairS?
@aquaskyline
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Will update longphase in the next version.

Before that, the option --longphase allows users to specify their own longphase binary.

@aquaskyline aquaskyline added the enhancement New feature or request label Jul 23, 2024
@aquaskyline aquaskyline changed the title longphase 1.7 bug causes "[E::fai_load3_core] Failed to open FASTA file" error; reported to be fixed in longphase 1.7.3 upgrading longphase to 1.7.3 Jul 23, 2024
@aquaskyline
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upgraded in v1.0.10

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@aquaskyline @signalbox2