2_0-Metabolomics-Release

MzTab-M 2.0 for Metabolomics

This directory contains the source of the standard document for the mzTab-m 2.0 for metabolomics standard and associated documents.

• The source of the standard document: mzTab_format_specification_2_0-M_release.adoc

• The compiled version of the document is available as html, docx, or pdf

• The proposed CV term mapping file for semantic validation: mzTab_2_0-M_mapping.xml

• Other files that reflect the standardization process and associated

When you use the mzTab-M format version 2.0, please cite the following publication:

• N. Hoffmann et al., Analytical Chemistry 2019. (PubMed record).

Working with AsciiDoc

• Homepage: http://asciidoctor.org/

Prerequisites

If you want to edit the AsciiDoc documents (*.adoc) in this directory, you can use any text editor application available on your platform.

However, we recommend to use Atom as an editor (https://atom.io/) together with the AsciiDoc Preview extension (https://atom.io/packages/asciidoc-preview).

Editing / Highlighting AsciiDoc

If you want to edit the document, have a look at the admonitions prefixed with

IMPORTANT: TODO

They also contain the keyword TODO to make automatic finding of TODO items easier. Unfortunately, GitHub does not highlight text marked with highlight me, so that TODOs should be close to the text or section that should be updated.

Conversion from docx to AsciiDoc

• Install pandoc: http://pandoc.org/

• Run the conversion, images will be extracted and placed in the 'ímg/' folder.

NOTE The script will transform all *.docx files in the current directory, renaming them to *.adoc in the process, so now data is being overwritten.

NOTE Currently, tables, especially nested ones are not properly converted.