You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I have a multiple, similar data sets. In a few of them, one or two chromosomes (different chromosomes in each data set) I get the following error:
In rm(list = "idxs") : object 'idxs' not found
for the command
TopDom(data = "my.matrix", window.size = 20 )
My guess is this has something to do with my matrix for that chromosome, e.g., there is a value the program doesn't like. My matrices are converted over from .hic files using straw and normalized. My guess is there is something that happened in the conversion/normalization. Note, the other 20ish chromosomes are fine.
If my hunch is correct, is there a way to tell TopDom just to ignore that value? If my hunch is incorrect, is there a way to fix the matrix or bypass this error?
The text was updated successfully, but these errors were encountered:
I have a multiple, similar data sets. In a few of them, one or two chromosomes (different chromosomes in each data set) I get the following error:
In rm(list = "idxs") : object 'idxs' not found
for the command
TopDom(data = "my.matrix", window.size = 20 )
My guess is this has something to do with my matrix for that chromosome, e.g., there is a value the program doesn't like. My matrices are converted over from .hic files using straw and normalized. My guess is there is something that happened in the conversion/normalization. Note, the other 20ish chromosomes are fine.
If my hunch is correct, is there a way to tell TopDom just to ignore that value? If my hunch is incorrect, is there a way to fix the matrix or bypass this error?
The text was updated successfully, but these errors were encountered: