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aaindex.txt
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aaindex.txt
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H ANDN920101
D alpha-CH chemical shifts (Andersen et al., 1992)
R PMID:1575719
A Andersen, N.H., Cao, B. and Chen, C.
T Peptide/protein structure analysis using the chemical shift index method:
upfield alpha-CH values reveal dynamic helices and aL sites
J Biochem. and Biophys. Res. Comm. 184, 1008-1014 (1992)
C BUNA790102 0.949
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
4.35 4.38 4.75 4.76 4.65 4.37 4.29 3.97 4.63 3.95
4.17 4.36 4.52 4.66 4.44 4.50 4.35 4.70 4.60 3.95
//
H ARGP820101
D Hydrophobicity index (Argos et al., 1982)
R PMID:7151796
A Argos, P., Rao, J.K.M. and Hargrave, P.A.
T Structural prediction of membrane-bound proteins
J Eur. J. Biochem. 128, 565-575 (1982)
C JOND750101 1.000 SIMZ760101 0.967 GOLD730101 0.936
TAKK010101 0.906 MEEJ810101 0.891 ROSM880104 0.872
CIDH920105 0.867 LEVM760106 0.865 CIDH920102 0.862
MEEJ800102 0.855 MEEJ810102 0.853 ZHOH040101 0.841
CIDH920103 0.827 PLIV810101 0.820 CIDH920104 0.819
LEVM760107 0.806 NOZY710101 0.800 GUYH850103 -0.808
PARJ860101 -0.835 WOLS870101 -0.838 BULH740101 -0.854
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.61 0.60 0.06 0.46 1.07 0. 0.47 0.07 0.61 2.22
1.53 1.15 1.18 2.02 1.95 0.05 0.05 2.65 1.88 1.32
//
H ARGP820102
D Signal sequence helical potential (Argos et al., 1982)
R PMID:7151796
A Argos, P., Rao, J.K.M. and Hargrave, P.A.
T Structural prediction of membrane-bound proteins
J Eur. J. Biochem. 128, 565-575 (1982)
C ARGP820103 0.961 KYTJ820101 0.803 JURD980101 0.802
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.18 0.20 0.23 0.05 1.89 0.72 0.11 0.49 0.31 1.45
3.23 0.06 2.67 1.96 0.76 0.97 0.84 0.77 0.39 1.08
//
H ARGP820103
D Membrane-buried preference parameters (Argos et al., 1982)
R PMID:7151796
A Argos, P., Rao, J.K.M. and Hargrave, P.A.
T Structural prediction of membrane-bound proteins
J Eur. J. Biochem. 128, 565-575 (1982)
C ARGP820102 0.961 MIYS850101 0.822 NAKH900106 0.810
EISD860103 0.810 KYTJ820101 0.806 JURD980101 0.800
PUNT030101 -0.810 MIYS990102 -0.814 MIYS990101 -0.817
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.56 0.45 0.27 0.14 1.23 0.51 0.23 0.62 0.29 1.67
2.93 0.15 2.96 2.03 0.76 0.81 0.91 1.08 0.68 1.14
//
H BEGF750101
D Conformational parameter of inner helix (Beghin-Dirkx, 1975)
R PMID:50789
A Beghin, F. and Dirkx, J.
T Une methode statistique simple de prediction des conformations proteiques
J Arch. Int. Physiol. Biochim. 83, 167-168 (1975)
C KANM800103 0.893 AURR980113 0.857 ROBB760103 0.852
CHOP780201 0.841 QIAN880105 0.833 AURR980109 0.821
QIAN880107 0.815 PALJ810102 0.811 AURR980108 0.810
CHOP780101 -0.803 CHOP780210 -0.804 CRAJ730103 -0.812
ROBB760108 -0.819 ROBB760113 -0.826 CHAM830101 -0.854
PALJ810106 -0.859
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1. 0.52 0.35 0.44 0.06 0.44 0.73 0.35 0.60 0.73
1. 0.60 1. 0.60 0.06 0.35 0.44 0.73 0.44 0.82
//
H BEGF750102
D Conformational parameter of beta-structure (Beghin-Dirkx, 1975)
R PMID:50789
A Beghin, F. and Dirkx, J.
T Une methode statistique simple de prediction des conformations proteiques
J Arch. Int. Physiol. Biochim. 83, 167-168 (1975)
C CORJ870105 0.878 CORJ870106 0.853 PRAM900103 0.834
LEVM780102 0.834 PALJ810110 0.834 NAGK730102 0.833
CORJ870107 0.831 QIAN880120 0.829 QIAN880119 0.811
ROBB760106 0.809 PTIO830102 0.807 LIFS790101 0.807
MIYS850101 0.806 PONP800107 0.803 PALJ810104 0.801
CORJ870108 -0.825 MEIH800101 -0.832 RACS770101 -0.840
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.77 0.72 0.55 0.65 0.65 0.72 0.55 0.65 0.83 0.98
0.83 0.55 0.98 0.98 0.55 0.55 0.83 0.77 0.83 0.98
//
H BEGF750103
D Conformational parameter of beta-turn (Beghin-Dirkx, 1975)
R PMID:50789
A Beghin, F. and Dirkx, J.
T Une methode statistique simple de prediction des conformations proteiques
J Arch. Int. Physiol. Biochim. 83, 167-168 (1975)
C ROBB760113 0.924 ROBB760108 0.922 ROBB760110 0.903
CHOP780101 0.885 CRAJ730103 0.874 PALJ810106 0.859
TANS770110 0.834
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.37 0.84 0.97 0.97 0.84 0.64 0.53 0.97 0.75 0.37
0.53 0.75 0.64 0.53 0.97 0.84 0.75 0.97 0.84 0.37
//
H BHAR880101
D Average flexibility indices (Bhaskaran-Ponnuswamy, 1988)
R
A Bhaskaran, R. and Ponnuswamy, P.K.
T Positional flexibilities of amino acid residues in globular proteins
J Int. J. Peptide Protein Res. 32, 241-255 (1988)
C VINM940103 0.869 KARP850102 0.806 WERD780101 -0.803
RICJ880111 -0.813
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.357 0.529 0.463 0.511 0.346 0.493 0.497 0.544 0.323 0.462
0.365 0.466 0.295 0.314 0.509 0.507 0.444 0.305 0.420 0.386
//
H BIGC670101
D Residue volume (Bigelow, 1967)
R PMID:6048539
A Bigelow, C.C.
T On the average hydrophobicity of proteins and the relation between it and
protein structure
J J. Theor. Biol. 16, 187-211 (1967) (Asn Gln 5.0)
C GOLD730102 1.000 KRIW790103 0.993 TSAJ990101 0.993
TSAJ990102 0.992 CHOC750101 0.990 GRAR740103 0.984
FAUJ880103 0.972 CHAM820101 0.966 HARY940101 0.960
CHOC760101 0.960 PONJ960101 0.950 FASG760101 0.919
LEVM760105 0.913 ROSG850101 0.910 DAWD720101 0.903
LEVM760102 0.896 ZHOH040102 0.884 LEVM760106 0.876
CHAM830106 0.870 LEVM760107 0.863 FAUJ880106 0.860
RADA880106 0.856 MCMT640101 0.814 RADA880103 -0.865
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
52.6 109.1 75.7 68.4 68.3 89.7 84.7 36.3 91.9 102.0
102.0 105.1 97.7 113.9 73.6 54.9 71.2 135.4 116.2 85.1
//
H BIOV880101
D Information value for accessibility; average fraction 35% (Biou et al., 1988)
R PMID:3237683
A Biou, V., Gibrat, J.F., Levin, J.M., Robson, B. and Garnier, J.
T Secondary structure prediction: combination of three different methods
J Protein Engineering 2, 185-191 (1988)
C RADA880108 0.981 ROSG850102 0.981 NISK860101 0.972
BIOV880102 0.968 MIYS850101 0.960 WERD780101 0.951
FAUJ830101 0.942 ZHOH040103 0.941 NADH010103 0.939
NADH010104 0.937 CASG920101 0.935 MEIH800103 0.934
CIDH920104 0.933 BASU050103 0.926 PONP800103 0.926
PONP800102 0.926 NADH010102 0.921 NISK800101 0.920
PONP800101 0.918 CORJ870101 0.917 CIDH920105 0.912
PONP930101 0.912 BASU050102 0.909 PONP800108 0.907
PLIV810101 0.899 MANP780101 0.899 ROBB790101 0.890
CORJ870107 0.889 CIDH920103 0.887 BASU050101 0.883
DESM900102 0.878 CORJ870103 0.876 JANJ780102 0.875
ROSM880105 0.874 CORJ870106 0.870 CORJ870104 0.867
NADH010105 0.867 CIDH920102 0.864 EISD860103 0.864
CORJ870105 0.859 MEEJ810101 0.855 BAEK050101 0.853
JANJ790102 0.848 CIDH920101 0.847 JURD980101 0.840
GUOD860101 0.839 SWER830101 0.839 NADH010101 0.838
BLAS910101 0.838 CORJ870102 0.837 KYTJ820101 0.829
EISD860101 0.828 JANJ790101 0.827 ZHOH040101 0.825
MEEJ810102 0.824 CHOC760103 0.823 PONP800107 0.816
EISD840101 0.811 DESM900101 0.807 KRIW710101 -0.813
PARS000101 -0.819 FUKS010102 -0.820 KARP850101 -0.825
JANJ780103 -0.829 WOEC730101 -0.829 ROSM880101 -0.830
LEVM760101 -0.831 KUHL950101 -0.834 FUKS010103 -0.840
GUYH850104 -0.844 HOPT810101 -0.848 WOLS870101 -0.854
ROSM880102 -0.854 RACS770103 -0.856 OOBM770101 -0.858
KRIW790102 -0.869 FUKS010104 -0.873 VINM940102 -0.876
PUNT030102 -0.878 KARP850102 -0.880 PUNT030101 -0.883
CORJ870108 -0.886 PARJ860101 -0.889 GUYH850103 -0.890
KIDA850101 -0.893 RACS770101 -0.893 VINM940103 -0.901
GRAR740102 -0.910 KRIW790101 -0.910 OOBM770103 -0.920
GUYH850102 -0.922 GUYH850101 -0.929 RACS770102 -0.937
VINM940101 -0.941 MIYS990101 -0.947 MIYS990102 -0.948
MEIH800101 -0.949 MEIH800102 -0.956 MIYS990103 -0.962
MIYS990104 -0.965 MIYS990105 -0.975 FASG890101 -0.982
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
16. -70. -74. -78. 168. -73. -106. -13. 50. 151.
145. -141. 124. 189. -20. -70. -38. 145. 53. 123.
//
H BIOV880102
D Information value for accessibility; average fraction 23% (Biou et al., 1988)
R PMID:3237683
A Biou, V., Gibrat, J.F., Levin, J.M., Robson, B. and Garnier, J.
T Secondary structure prediction: combination of three different methods
J Protein Engineering 2, 185-191 (1988)
C BIOV880101 0.968 ROSG850102 0.960 RADA880108 0.942
NISK860101 0.939 MIYS850101 0.930 WERD780101 0.929
CASG920101 0.919 MEIH800103 0.916 NADH010102 0.914
NADH010103 0.913 FAUJ830101 0.911 NADH010104 0.900
ZHOH040103 0.891 CIDH920104 0.890 CIDH920105 0.882
CORJ870101 0.882 PONP800103 0.879 PONP930101 0.877
DESM900102 0.876 NISK800101 0.873 ROSM880105 0.871
BASU050103 0.868 PONP800102 0.867 JANJ780102 0.862
PONP800101 0.860 CIDH920103 0.860 PLIV810101 0.858
JANJ790102 0.856 PONP800108 0.854 WARP780101 0.853
CORJ870107 0.850 MANP780101 0.847 EISD860103 0.845
CORJ870103 0.840 BASU050102 0.838 CIDH920102 0.837
EISD860101 0.832 NAKH900110 0.829 CORJ870105 0.823
MEEJ810101 0.822 DESM900101 0.821 ROBB790101 0.821
CIDH920101 0.819 CORJ870106 0.818 GUOD860101 0.817
CORJ870104 0.815 PONP800107 0.814 EISD840101 0.814
BASU050101 0.812 BLAS910101 0.809 JURD980101 0.805
NADH010101 0.804 KARP850101 -0.804 KUHL950101 -0.809
JANJ780101 -0.809 FUKS010102 -0.810 PARS000101 -0.813
GUYH850103 -0.818 WOEC730101 -0.819 ROSM880101 -0.824
VINM940102 -0.826 CORJ870108 -0.831 ROSM880102 -0.837
WOLS870101 -0.842 LEVM760101 -0.847 GUYH850104 -0.855
KARP850102 -0.859 JANJ780103 -0.860 PUNT030102 -0.860
HOPT810101 -0.864 PARJ860101 -0.875 RACS770101 -0.875
KRIW790101 -0.876 OOBM770101 -0.877 KRIW790102 -0.878
GRAR740102 -0.881 GUYH850101 -0.885 FUKS010104 -0.887
PUNT030101 -0.888 VINM940103 -0.889 KIDA850101 -0.892
MIYS990101 -0.901 MIYS990102 -0.902 GUYH850102 -0.903
RACS770103 -0.906 MIYS990103 -0.923 OOBM770103 -0.925
FASG890101 -0.928 VINM940101 -0.929 MIYS990104 -0.932
RACS770102 -0.932 MEIH800101 -0.937 MIYS990105 -0.947
MEIH800102 -0.951
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
44. -68. -72. -91. 90. -117. -139. -8. 47. 100.
108. -188. 121. 148. -36. -60. -54. 163. 22. 117.
//
H BROC820101
D Retention coefficient in TFA (Browne et al., 1982)
R PMID:7125223
A Browne, C.A., Bennett, H.P.J. and Solomon, S.
T The isolation of peptides by high-performance liquid chromatography using
predicted elution positions
J Anal. Biochem. 124, 201-208 (1982)
C BROC820102 0.925 ZIMJ680105 0.896 MEEJ800102 0.877
TAKK010101 0.836 GUOD860101 0.832 NAKH900110 0.830
NOZY710101 0.829 MEEJ810102 0.820 RADA880102 0.811
BULH740101 -0.815 PARJ860101 -0.849 WOLS870101 -0.871
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
7.3 -3.6 -5.7 -2.9 -9.2 -0.3 -7.1 -1.2 -2.1 6.6
20.0 -3.7 5.6 19.2 5.1 -4.1 0.8 16.3 5.9 3.5
//
H BROC820102
D Retention coefficient in HFBA (Browne et al., 1982)
R PMID:7125223
A Browne, C.A., Bennett, H.P.J. and Solomon, S.
T The isolation of peptides by high-performance liquid chromatography using
predicted elution positions
J Anal. Biochem. 124, 201-208 (1982)
C BROC820101 0.925 ZIMJ680105 0.865 MEEJ800102 0.857
MEEJ800101 0.840 TAKK010101 0.839
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
3.9 3.2 -2.8 -2.8 -14.3 1.8 -7.5 -2.3 2.0 11.0
15.0 -2.5 4.1 14.7 5.6 -3.5 1.1 17.8 3.8 2.1
//
H BULH740101
D Transfer free energy to surface (Bull-Breese, 1974)
R PMID:4839053
A Bull, H.B. and Breese, K.
T Surface tension of amino acid solutions: A hydrophobicity scale of the amino
acid residues
J Arch. Biochem. Biophys. 161, 665-670 (1974)
C WOLS870101 0.929 PARJ860101 0.909 MIYS990101 0.884
MIYS990102 0.880 GRAR740102 0.822 GUYH850103 0.820
COWR900101 -0.804 ROBB790101 -0.813 BROC820101 -0.815
LEVM760106 -0.818 ZHOH040103 -0.828 CIDH920104 -0.829
FAUJ830101 -0.830 BASU050103 -0.833 EISD860101 -0.833
MIYS850101 -0.838 WILM950101 -0.845 BASU050102 -0.845
CIDH920103 -0.848 CIDH920102 -0.851 JOND750101 -0.853
ARGP820101 -0.854 BASU050101 -0.854 RADA880102 -0.856
ZHOH040102 -0.860 BLAS910101 -0.860 TAKK010101 -0.865
CIDH920105 -0.871 GOLD730101 -0.874 MEEJ800102 -0.875
ZHOH040101 -0.876 MEEJ810101 -0.876 ZIMJ680105 -0.879
MEEJ810102 -0.880 ROSM880104 -0.884 NOZY710101 -0.892
SIMZ760101 -0.894 VENT840101 -0.907 PLIV810101 -0.912
GUOD860101 -0.922 SWER830101 -0.923 CORJ870102 -0.923
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
-0.20 -0.12 0.08 -0.20 -0.45 0.16 -0.30 0.00 -0.12 -2.26
-2.46 -0.35 -1.47 -2.33 -0.98 -0.39 -0.52 -2.01 -2.24 -1.56
//
H BULH740102
D Apparent partial specific volume (Bull-Breese, 1974)
R PMID:4839053
A Bull, H.B. and Breese, K.
T Surface tension of amino acid solutions: A hydrophobicity scale of the amino
acid residues
J Arch. Biochem. Biophys. 161, 665-670 (1974) (Tyr !)
C COHE430101 0.923 ZIMJ680102 0.825 GOLD730101 0.825
SIMZ760101 0.815
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.691 0.728 0.596 0.558 0.624 0.649 0.632 0.592 0.646 0.809
0.842 0.767 0.709 0.756 0.730 0.594 0.655 0.743 0.743 0.777
//
H BUNA790101
D alpha-NH chemical shifts (Bundi-Wuthrich, 1979)
R
A Bundi, A. and Wuthrich, K.
T 1H-nmr parameters of the common amino acid residues measured in aqueous
solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH
J Biopolymers 18, 285-297 (1979) (Pro !)
C BLAM930101 0.945 ONEK900101 0.902 ROBB760104 0.823
FAUJ880113 0.818 CHOP780213 -0.822 ISOY800104 -0.842
MUNV940104 -0.865 TANS770104 -0.867 MUNV940105 -0.874
GEOR030109 -0.901 AVBF000104 -0.922 ONEK900102 -0.949
FINA910102 -0.992
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
8.249 8.274 8.747 8.410 8.312 8.411 8.368 8.391 8.415 8.195
8.423 8.408 8.418 8.228 0. 8.380 8.236 8.094 8.183 8.436
//
H BUNA790102
D alpha-CH chemical shifts (Bundi-Wuthrich, 1979)
R
A Bundi, A. and Wuthrich, K.
T 1H-nmr parameters of the common amino acid residues measured in aqueous
solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH
J Biopolymers 18, 285-297 (1979)
C ANDN920101 0.949
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
4.349 4.396 4.755 4.765 4.686 4.373 4.295 3.972 4.630 4.224
4.385 4.358 4.513 4.663 4.471 4.498 4.346 4.702 4.604 4.184
//
H BUNA790103
D Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)
R
A Bundi, A. and Wuthrich, K.
T 1H-nmr parameters of the common amino acid residues measured in aqueous
solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH
J Biopolymers 18, 285-297 (1979) (Met Pro Trp !)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
6.5 6.9 7.5 7.0 7.7 6.0 7.0 5.6 8.0 7.0
6.5 6.5 0. 9.4 0. 6.5 6.9 0. 6.8 7.0
//
H BURA740101
D Normalized frequency of alpha-helix (Burgess et al., 1974)
R
A Burgess, A.W., Ponnuswamy, P.K. and Scheraga, H.A.
T Analysis of conformations of amino acid residues and prediction of backbone
topography in proteins
J Isr. J. Chem. 12, 239-286 (1974)
C CHOP780201 0.917 TANS770101 0.917 ROBB760101 0.912
CRAJ730101 0.900 PALJ810102 0.900 NAGK730101 0.883
GEIM800101 0.858 KANM800101 0.855 MAXF760101 0.852
PALJ810101 0.850 ISOY800101 0.839 LEVM780104 0.833
GEIM800104 0.819 KANM800103 0.810 RACS820108 0.809
AURR980108 0.808 PRAM900102 0.805 LEVM780101 0.805
NAGK730103 -0.830
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.486 0.262 0.193 0.288 0.200 0.418 0.538 0.120 0.400 0.370
0.420 0.402 0.417 0.318 0.208 0.200 0.272 0.462 0.161 0.379
//
H BURA740102
D Normalized frequency of extended structure (Burgess et al., 1974)
R
A Burgess, A.W., Ponnuswamy, P.K. and Scheraga, H.A.
T Analysis of conformations of amino acid residues and prediction of backbone
topography in proteins
J Isr. J. Chem. 12, 239-286 (1974)
C ROBB760105 0.821
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.288 0.362 0.229 0.271 0.533 0.327 0.262 0.312 0.200 0.411
0.400 0.265 0.375 0.318 0.340 0.354 0.388 0.231 0.429 0.495
//
H CHAM810101
D Steric parameter (Charton, 1981)
R PMID:7300379
A Charton, M.
T Protein folding and the genetic code: An alternative quantitative model
J J. Theor. Biol. 91, 115-123 (1981) (Pro !)
C FAUJ880102 0.881 LEVM760104 -0.818 KIMC930101 -0.848
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.52 0.68 0.76 0.76 0.62 0.68 0.68 0.00 0.70 1.02
0.98 0.68 0.78 0.70 0.36 0.53 0.50 0.70 0.70 0.76
//
H CHAM820101
D Polarizability parameter (Charton-Charton, 1982)
R PMID:7183857
A Charton, M. and Charton, B.I.
T The structural dependence of amino acid hydrophobicity parameters
J J. Theor. Biol. 99, 629-644 (1982) (Pro 0.018)
C FAUJ880103 0.992 CHOC750101 0.982 TSAJ990102 0.978
TSAJ990101 0.977 GOLD730102 0.967 CHOC760101 0.966
BIGC670101 0.966 KRIW790103 0.963 FASG760101 0.962
GRAR740103 0.951 PONJ960101 0.938 HARY940101 0.933
ROSG850101 0.917 LEVM760102 0.915 LEVM760105 0.915
FAUJ880106 0.902 CHAM830106 0.899 LEVM760107 0.891
MCMT640101 0.871 DAWD720101 0.865 RADA880106 0.847
ZHOH040102 0.826 LEVM760106 0.818 HUTJ700102 0.815
CHAM830105 0.809 SNEP660103 0.808 RADA880103 -0.912
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.046 0.291 0.134 0.105 0.128 0.180 0.151 0.000 0.230 0.186
0.186 0.219 0.221 0.290 0.131 0.062 0.108 0.409 0.298 0.140
//
H CHAM820102
D Free energy of solution in water, kcal/mole (Charton-Charton, 1982)
R PMID:7183857
A Charton, M. and Charton, B.I.
T The structural dependence of amino acid hydrophobicity parameters
J J. Theor. Biol. 99, 629-644 (1982) (Asn His Lys Thr !)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
-0.368 -1.03 0. 2.06 4.53 0.731 1.77 -0.525 0. 0.791
1.07 0. 0.656 1.06 -2.24 -0.524 0. 1.60 4.91 0.401
//
H CHAM830101
D The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983)
C CHOP780101 0.946 CHOP780216 0.942 PALJ810106 0.939
GEIM800111 0.938 CHOP780203 0.931 QIAN880132 0.925
TANS770110 0.917 GEIM800108 0.916 QIAN880133 0.913
LEVM780103 0.909 PRAM900104 0.909 CHOP780210 0.905
LEVM780106 0.900 ISOY800103 0.881 QIAN880131 0.860
NAGK730103 0.857 ROBB760113 0.841 QIAN880134 0.841
PALJ810105 0.826 CRAJ730103 0.821 QIAN880135 0.814
ROBB760108 0.812 ROBB760110 0.804 AVBF000102 -0.803
QIAN880105 -0.803 PALJ810102 -0.808 FAUJ880102 -0.809
ISOY800101 -0.815 RICJ880109 -0.826 CHOP780201 -0.828
AURR980113 -0.828 ROBB760101 -0.828 AURR980108 -0.834
PTIO830101 -0.841 AURR980114 -0.842 BEGF750101 -0.854
QIAN880106 -0.856 QIAN880107 -0.858 ROBB760103 -0.878
KANM800103 -0.889 SUEM840101 -0.891 AURR980109 -0.896
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.71 1.06 1.37 1.21 1.19 0.87 0.84 1.52 1.07 0.66
0.69 0.99 0.59 0.71 1.61 1.34 1.08 0.76 1.07 0.63
//
H CHAM830102
D A parameter defined from the residuals obtained from the best correlation of
the Chou-Fasman parameter of beta-sheet (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
-0.118 0.124 0.289 0.048 0.083 -0.105 -0.245 0.104 0.138 0.230
-0.052 0.032 -0.258 0.015 0. 0.225 0.166 0.158 0.094 0.513
//
H CHAM830103
D The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C AVBF000101 0.843
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0. 1. 1. 1. 1. 1. 1. 0. 1. 2.
1. 1. 1. 1. 0. 1. 2. 1. 1. 2.
//
H CHAM830104
D The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)
R PMID:
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0. 1. 1. 1. 0. 1. 1. 0. 1. 1.
2. 1. 1. 1. 0. 0. 0. 1. 1. 0.
//
H CHAM830105
D The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C CHAM830106 0.874 LEVM760102 0.843 FASG760101 0.839
CHOC760101 0.833 LEVM760105 0.829 FAUJ880103 0.813
CHAM820101 0.809 RADA880103 -0.808
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0. 1. 0. 0. 0. 1. 1. 0. 1. 0.
0. 1. 1. 1. 0. 0. 0. 1.5 1. 0.
//
H CHAM830106
D The number of bonds in the longest chain (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C LEVM760102 0.962 LEVM760105 0.958 FASG760101 0.943
CHOC760101 0.937 FAUJ880103 0.927 RADA880106 0.922
PONJ960101 0.917 CHOC750101 0.906 CHAM820101 0.899
TSAJ990102 0.896 HARY940101 0.894 GRAR740103 0.890
TSAJ990101 0.889 KRIW790103 0.876 CHAM830105 0.874
BIGC670101 0.870 GOLD730102 0.869 OOBM770102 0.858
FAUJ880106 0.845 FAUJ880104 0.817 RADA880103 -0.901
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0. 5. 2. 2. 1. 3. 3. 0. 3. 2.
2. 4. 3. 4. 0. 1. 1. 5. 5. 1.
//
H CHAM830107
D A parameter of charge transfer capability (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0. 0. 1. 1. 0. 0. 1. 1. 0. 0.
0. 0. 0. 0. 0. 0. 0. 0. 0. 0.
//
H CHAM830108
D A parameter of charge transfer donor capability (Charton-Charton, 1983)
R PMID:6876837
A Charton, M. and Charton, B.
T The dependence of the Chou-Fasman parameters on amino acid side chain
structure
J J. Theor. Biol. 111, 447-450 (1983) (Pro !)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0. 1. 1. 0. 1. 1. 0. 0. 1. 0.
0. 1. 1. 1. 0. 0. 0. 1. 1. 0.
//
H CHOC750101
D Average volume of buried residue (Chothia, 1975)
R PMID:1118010
A Chothia, C.
T Structural invariants in protein folding
J Nature 254, 304-308 (1975) (Arg missing)
C TSAJ990102 0.996 TSAJ990101 0.995 FAUJ880103 0.990
BIGC670101 0.990 GOLD730102 0.989 CHAM820101 0.982
KRIW790103 0.982 CHOC760101 0.981 GRAR740103 0.973
PONJ960101 0.966 HARY940101 0.961 FASG760101 0.956
LEVM760105 0.939 LEVM760102 0.933 ROSG850101 0.908
CHAM830106 0.906 DAWD720101 0.901 FAUJ880106 0.888
RADA880106 0.867 LEVM760107 0.858 ZHOH040102 0.856
LEVM760106 0.841 MCMT640101 0.822 HUTJ700102 0.802
RADA880103 -0.892
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
91.5 202.0 135.2 124.5 117.7 161.1 155.1 66.4 167.3 168.8
167.9 171.3 170.8 203.4 129.3 99.1 122.1 237.6 203.6 141.7
//
H CHOC760101
D Residue accessible surface area in tripeptide (Chothia, 1976)
R PMID:994183
A Chothia, C.
T The nature of the accessible and buried surfaces in proteins
J J. Mol. Biol. 105, 1-14 (1976)
C FAUJ880103 0.985 CHOC750101 0.981 FASG760101 0.978
LEVM760102 0.972 TSAJ990102 0.972 LEVM760105 0.968
TSAJ990101 0.968 CHAM820101 0.966 PONJ960101 0.961
GOLD730102 0.960 BIGC670101 0.960 KRIW790103 0.948
HARY940101 0.946 GRAR740103 0.945 CHAM830106 0.937
DAWD720101 0.901 FAUJ880106 0.898 RADA880106 0.875
WOLS870102 0.845 ROSG850101 0.842 FAUJ880104 0.835
CHAM830105 0.833 OOBM770102 0.824 HUTJ700102 0.819
MCMT640101 0.809 LEVM760107 0.807 RADA880103 -0.924
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
115. 225. 160. 150. 135. 180. 190. 75. 195. 175.
170. 200. 185. 210. 145. 115. 140. 255. 230. 155.
//
H CHOC760102
D Residue accessible surface area in folded protein (Chothia, 1976)
R PMID:994183
A Chothia, C.
T The nature of the accessible and buried surfaces in proteins
J J. Mol. Biol. 105, 1-14 (1976)
C JANJ780101 0.973 GUYH850104 0.970 JANJ780103 0.959
GUYH850105 0.946 OOBM770101 0.925 FAUJ880109 0.872
ROSM880102 0.845 MEIH800102 0.839 PRAM900101 0.826
ENGD860101 0.826 PUNT030101 0.809 RACS770102 0.809
GUYH850101 0.807 KIDA850101 0.804 MEIH800103 -0.802
EISD860103 -0.802 JACR890101 -0.803 NADH010104 -0.809
JANJ790101 -0.809 RADA880101 -0.814 ROSG850102 -0.819
DESM900102 -0.823 RADA880104 -0.830 WOLR790101 -0.834
KYTJ820101 -0.838 WOLR810101 -0.840 NADH010103 -0.840
CHOC760104 -0.845 WARP780101 -0.849 JURD980101 -0.851
OLSK800101 -0.886 EISD840101 -0.892 NADH010102 -0.893
CHOC760103 -0.912 RADA880107 -0.925 JANJ780102 -0.935
JANJ790102 -0.969
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
25. 90. 63. 50. 19. 71. 49. 23. 43. 18.
23. 97. 31. 24. 50. 44. 47. 32. 60. 18.
//
H CHOC760103
D Proportion of residues 95% buried (Chothia, 1976)
R PMID:994183
A Chothia, C.
T The nature of the accessible and buried surfaces in proteins
J J. Mol. Biol. 105, 1-14 (1976)
C OLSK800101 0.981 JURD980101 0.967 KYTJ820101 0.964
JANJ780102 0.950 NADH010102 0.910 CHOC760104 0.907
JANJ790102 0.905 EISD860103 0.892 JANJ790101 0.887
EISD840101 0.885 NADH010101 0.881 DESM900102 0.877
NADH010103 0.875 WOLR810101 0.873 RADA880107 0.870
MEIH800103 0.865 MANP780101 0.859 WOLR790101 0.857
RADA880101 0.853 ROSG850102 0.851 NADH010104 0.848
PONP800103 0.837 PONP800102 0.836 PONP800101 0.830
RADA880108 0.830 WARP780101 0.824 NAKH920108 0.824
BIOV880101 0.823 CORJ870101 0.822 RADA880104 0.821
COWR900101 0.820 PONP930101 0.816 PONP800107 0.813
MIYS850101 0.810 LIFS790102 0.810 PONP800108 0.809
BASU050103 0.805 MIYS990101 -0.803 MIYS990102 -0.805
FAUJ880109 -0.806 ENGD860101 -0.813 PRAM900101 -0.814
ROSM880101 -0.819 FASG890101 -0.849 GUYH850101 -0.856
PUNT030101 -0.859 KUHL950101 -0.865 ROSM880102 -0.869
RACS770102 -0.875 JANJ780103 -0.888 JANJ780101 -0.892
MEIH800102 -0.894 OOBM770101 -0.902 GUYH850104 -0.907
CHOC760102 -0.912 GUYH850105 -0.933
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.38 0.01 0.12 0.15 0.45 0.07 0.18 0.36 0.17 0.60
0.45 0.03 0.40 0.50 0.18 0.22 0.23 0.27 0.15 0.54
//
H CHOC760104
D Proportion of residues 100% buried (Chothia, 1976)
R PMID:994183
A Chothia, C.
T The nature of the accessible and buried surfaces in proteins
J J. Mol. Biol. 105, 1-14 (1976) (normalized by the total number)
C CHOC760103 0.907 JANJ780102 0.903 KYTJ820101 0.889
JANJ790101 0.886 OLSK800101 0.872 JURD980101 0.870
WOLR810101 0.868 WOLR790101 0.851 PONP800104 0.844
JANJ790102 0.835 DESM900102 0.824 NADH010102 0.817
WARP780101 0.815 NADH010101 0.804 GUYH850105 -0.822
CHOC760102 -0.845 GUYH850104 -0.845 JANJ780103 -0.851
JANJ780101 -0.854 OOBM770101 -0.857
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.20 0.00 0.03 0.04 0.22 0.01 0.03 0.18 0.02 0.19
0.16 0.00 0.11 0.14 0.04 0.08 0.08 0.04 0.03 0.18
//
H CHOP780101
D Normalized frequency of beta-turn (Chou-Fasman, 1978a)
R PMID:354496
A Chou, P.Y. and Fasman, G.D.
T Empirical predictions of protein conformation
J Ann. Rev. Biochem. 47, 251-276 (1978)
C PALJ810106 0.977 TANS770110 0.956 CHAM830101 0.946
CHOP780203 0.940 CHOP780216 0.929 CHOP780210 0.921
ROBB760113 0.907 GEIM800108 0.899 QIAN880133 0.897
QIAN880132 0.896 LEVM780103 0.893 PRAM900104 0.891
LEVM780106 0.890 ROBB760108 0.887 BEGF750103 0.885
ISOY800103 0.885 CRAJ730103 0.882 GEIM800111 0.878
PALJ810105 0.868 ROBB760110 0.863 NAGK730103 0.827
QIAN880131 0.824 AURR980114 -0.803 BEGF750101 -0.803
QIAN880107 -0.809 KANM800103 -0.824 AURR980109 -0.837
SUEM840101 -0.845
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.66 0.95 1.56 1.46 1.19 0.98 0.74 1.56 0.95 0.47
0.59 1.01 0.60 0.60 1.52 1.43 0.96 0.96 1.14 0.50
//
H CHOP780201
D Normalized frequency of alpha-helix (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810102 0.981 ROBB760101 0.969 ISOY800101 0.959
MAXF760101 0.956 KANM800101 0.956 TANS770101 0.947
BURA740101 0.917 GEIM800101 0.912 KANM800103 0.912
NAGK730101 0.886 LEVM780104 0.886 PALJ810101 0.881
QIAN880106 0.874 PRAM900102 0.873 LEVM780101 0.873
GEIM800104 0.868 RACS820108 0.868 AURR980108 0.867
AURR980109 0.859 AURR980112 0.856 CRAJ730101 0.851
QIAN880107 0.843 BEGF750101 0.841 QIAN880105 0.835
AURR980114 0.828 AURR980115 0.816 AURR980110 0.814
PALJ810109 0.814 AURR980111 0.813 ROBB760103 0.806
MUNV940101 -0.802 CRAJ730103 -0.808 ROBB760113 -0.811
MUNV940102 -0.812 CHAM830101 -0.828 NAGK730103 -0.837
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.42 0.98 0.67 1.01 0.70 1.11 1.51 0.57 1.00 1.08
1.21 1.16 1.45 1.13 0.57 0.77 0.83 1.08 0.69 1.06
//
H CHOP780202
D Normalized frequency of beta-sheet (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810104 0.970 LIFS790101 0.947 KANM800102 0.945
PALJ810103 0.937 ROBB760106 0.931 LEVM780105 0.930
GEIM800107 0.929 QIAN880120 0.915 PTIO830102 0.913
QIAN880121 0.911 LIFS790103 0.908 GEIM800105 0.890
ROBB760105 0.885 BASU050101 0.883 BASU050103 0.874
PONP930101 0.867 NAGK730102 0.858 QIAN880119 0.855
CHOP780208 0.851 BASU050102 0.841 KANM800104 0.839
GEIM800106 0.839 LEVM780102 0.833 PRAM900103 0.833
NISK860101 0.832 SWER830101 0.823 CORJ870102 0.822
CHOP780209 0.822 CORJ870101 0.815 PALJ810112 0.815
PONP800108 0.809 PALJ810110 0.808 MANP780101 0.805
VENT840101 0.805 MIYS990102 -0.801 PUNT030102 -0.803
VINM940102 -0.810 OOBM770103 -0.820 GEIM800110 -0.824
MIYS990103 -0.825 MIYS990104 -0.829 VINM940101 -0.831
MUNV940103 -0.892
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.83 0.93 0.89 0.54 1.19 1.10 0.37 0.75 0.87 1.60
1.30 0.74 1.05 1.38 0.55 0.75 1.19 1.37 1.47 1.70
//
H CHOP780203
D Normalized frequency of beta-turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C CHOP780216 0.979 CHOP780101 0.940 TANS770110 0.940
LEVM780106 0.935 GEIM800111 0.933 ISOY800103 0.933
CHAM830101 0.931 PRAM900104 0.928 QIAN880132 0.928
LEVM780103 0.927 GEIM800108 0.925 CHOP780210 0.918
QIAN880133 0.915 PALJ810106 0.907 PALJ810105 0.878
QIAN880131 0.861 QIAN880134 0.838 RACS770101 0.827
QIAN880135 0.811 CORJ870106 -0.813 QIAN880119 -0.814
CORJ870105 -0.815 PONP800107 -0.818 SUEM840101 -0.892
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.74 1.01 1.46 1.52 0.96 0.96 0.95 1.56 0.95 0.47
0.50 1.19 0.60 0.66 1.56 1.43 0.98 0.60 1.14 0.59
//
H CHOP780204
D Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760102 0.911
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.29 0.44 0.81 2.02 0.66 1.22 2.44 0.76 0.73 0.67
0.58 0.66 0.71 0.61 2.01 0.74 1.08 1.47 0.68 0.61
//
H CHOP780205
D Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760104 0.841 QIAN880109 0.806
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
1.20 1.25 0.59 0.61 1.11 1.22 1.24 0.42 1.77 0.98
1.13 1.83 1.57 1.10 0.00 0.96 0.75 0.40 0.73 1.25
//
H CHOP780206
D Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.70 0.34 1.42 0.98 0.65 0.75 1.04 1.41 1.22 0.78
0.85 1.01 0.83 0.93 1.10 1.55 1.09 0.62 0.99 0.75
//
H CHOP780207
D Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.52 1.24 1.64 1.06 0.94 0.70 0.59 1.64 1.86 0.87
0.84 1.49 0.52 1.04 1.58 0.93 0.86 0.16 0.96 0.32
//
H CHOP780208
D Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C NAGK730102 0.860 CHOP780202 0.851 ROBB760106 0.846
LIFS790101 0.820 QIAN880119 0.807 KANM800102 0.804
QIAN880120 0.800
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.86 0.90 0.66 0.38 0.87 1.65 0.35 0.63 0.54 1.94
1.30 1.00 1.43 1.50 0.66 0.63 1.17 1.49 1.07 1.69
//
H CHOP780209
D Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810104 0.849 CHOP780202 0.822 VENT840101 0.817
PTIO830102 0.814 QIAN880121 0.809
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.75 0.90 1.21 0.85 1.11 0.65 0.55 0.74 0.90 1.35
1.27 0.74 0.95 1.50 0.40 0.79 0.75 1.19 1.96 1.79
//
H CHOP780210
D Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C CHOP780101 0.921 CHOP780203 0.918 PALJ810106 0.905
CHAM830101 0.905 CHOP780216 0.896 GEIM800108 0.896
GEIM800111 0.867 TANS770110 0.858 QIAN880132 0.852
LEVM780103 0.852 PRAM900104 0.850 ISOY800103 0.829
QIAN880131 0.826 QIAN880133 0.820 NAGK730103 0.814
LEVM780106 0.812 PALJ810105 0.803 RICJ880111 -0.804
BEGF750101 -0.804 RICJ880107 -0.818 PONP800107 -0.820
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.67 0.89 1.86 1.39 1.34 1.09 0.92 1.46 0.78 0.59
0.46 1.09 0.52 0.30 1.58 1.41 1.09 0.48 1.23 0.42
//
H CHOP780211
D Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760112 0.841
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.74 1.05 1.13 1.32 0.53 0.77 0.85 1.68 0.96 0.53
0.59 0.82 0.85 0.44 1.69 1.49 1.16 1.59 1.01 0.59
//
H CHOP780212
D Frequency of the 1st residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C PALJ810106 0.801
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.060 0.070 0.161 0.147 0.149 0.074 0.056 0.102 0.140 0.043
0.061 0.055 0.068 0.059 0.102 0.120 0.086 0.077 0.082 0.062
//
H CHOP780213
D Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C TANS770104 0.954 ISOY800104 0.916 QIAN880134 0.870
QIAN880135 0.851 MUNV940104 0.836 FINA910102 0.832
MUNV940105 0.826 GEOR030109 0.800 BUNA790101 -0.822
BLAM930101 -0.824 PTIO830101 -0.835
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.076 0.106 0.083 0.110 0.053 0.098 0.060 0.085 0.047 0.034
0.025 0.115 0.082 0.041 0.301 0.139 0.108 0.013 0.065 0.048
//
H CHOP780214
D Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ISOY800105 0.923 TANS770105 0.862
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.035 0.099 0.191 0.179 0.117 0.037 0.077 0.190 0.093 0.013
0.036 0.072 0.014 0.065 0.034 0.125 0.065 0.064 0.114 0.028
//
H CHOP780215
D Frequency of the 4th residue in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C ROBB760111 0.825
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.058 0.085 0.091 0.081 0.128 0.098 0.064 0.152 0.054 0.056
0.070 0.095 0.055 0.065 0.068 0.106 0.079 0.167 0.125 0.053
//
H CHOP780216
D Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)
R PMID:364941
A Chou, P.Y. and Fasman, G.D.
T Prediction of the secondary structure of proteins from their amino acid
sequence
J Adv. Enzymol. 47, 45-148 (1978)
C CHOP780203 0.979 GEIM800111 0.955 LEVM780106 0.953
LEVM780103 0.952 PRAM900104 0.951 CHAM830101 0.942
GEIM800108 0.942 QIAN880133 0.939 QIAN880132 0.931
TANS770110 0.930 CHOP780101 0.929 ISOY800103 0.921
PALJ810106 0.904 QIAN880134 0.900 CHOP780210 0.896
QIAN880135 0.884 PALJ810105 0.881 QIAN880131 0.873
NAGK730103 0.819 QIAN880120 -0.800 CORJ870106 -0.803
FAUJ880102 -0.807 KANM800103 -0.808 QIAN880107 -0.808
ROBB760103 -0.841 PTIO830101 -0.855 SUEM840101 -0.874
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.64 1.05 1.56 1.61 0.92 0.84 0.80 1.63 0.77 0.29
0.36 1.13 0.51 0.62 2.04 1.52 0.98 0.48 1.08 0.43
//
H CIDH920101
D Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)
R PMID:1518784
A Cid, H., Bunster, M., Canales, M. and Gazitua, F.
T Hydrophobicity and structural classes in proteins
J Protein Engineering 5, 373-375 (1992)
C CIDH920102 0.921 CIDH920105 0.921 NISK860101 0.882
WERD780101 0.878 CIDH920103 0.872 RADA880108 0.858
BASU050102 0.858 ZHOH040101 0.855 CORJ870102 0.855
SWER830101 0.853 BIOV880101 0.847 ROBB790101 0.846
ZHOH040103 0.845 CORJ870107 0.843 MIYS850101 0.843
PLIV810101 0.843 CORJ870104 0.840 BASU050101 0.839
CIDH920104 0.833 CORJ870106 0.832 ROSG850101 0.831
CORJ870105 0.828 BASU050103 0.828 LEVM760106 0.826
CORJ870103 0.825 BIOV880102 0.819 ZHOH040102 0.811
PONP800101 0.805 VINM940103 -0.814 OOBM770103 -0.818
KARP850102 -0.828 RACS770101 -0.837 MIYS990103 -0.838
GUYH850102 -0.843 CORJ870108 -0.845 MIYS990102 -0.846
MIYS990101 -0.847 MIYS990105 -0.849 VINM940101 -0.854
FUKS010103 -0.854 GUYH850103 -0.854 MIYS990104 -0.860
MEIH800101 -0.863 KARP850101 -0.864 PARJ860101 -0.871
PARS000101 -0.877 VINM940102 -0.885
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
-0.45 -0.24 -0.20 -1.52 0.79 -0.99 -0.80 -1.00 1.07 0.76
1.29 -0.36 1.37 1.48 -0.12 -0.98 -0.70 1.38 1.49 1.26
//
H CIDH920102
D Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)
R PMID:1518784
A Cid, H., Bunster, M., Canales, M. and Gazitua, F.
T Hydrophobicity and structural classes in proteins
J Protein Engineering 5, 373-375 (1992)
C CIDH920105 0.969 ZHOH040101 0.939 CIDH920101 0.921
BASU050102 0.914 CIDH920103 0.911 ZHOH040103 0.909
CIDH920104 0.904 NISK860101 0.897 ROBB790101 0.896
NOZY710101 0.889 MEEJ810101 0.887 PLIV810101 0.877
LEVM760106 0.873 MIYS850101 0.873 CORJ870102 0.872
WERD780101 0.871 SWER830101 0.870 ROSG850101 0.866
BIOV880101 0.864 ZHOH040102 0.862 RADA880102 0.862
ARGP820101 0.862 JOND750101 0.861 ROSM880104 0.859
TAKK010101 0.859 BASU050101 0.858 MEEJ800102 0.856
FAUJ830101 0.856 BASU050103 0.856 MEEJ810102 0.843
BIOV880102 0.837 WIMW960101 0.837 RADA880108 0.833
SIMZ760101 0.832 GUOD860101 0.831 GOLD730101 0.829
PONP930101 0.820 EISD860101 0.819 ZASB820101 0.809
LIFS790101 0.808 BLAS910101 0.805 CASG920101 0.802
RACS770101 -0.825 VINM940103 -0.826 FUKS010103 -0.826
GRAR740102 -0.842 MIYS990103 -0.845 BULH740101 -0.851
GUYH850102 -0.855 MIYS990105 -0.859 MEIH800101 -0.867
WOLS870101 -0.869 MIYS990102 -0.870 PARS000101 -0.871
VINM940101 -0.872 MIYS990101 -0.872 KARP850101 -0.873
MIYS990104 -0.877 OOBM770103 -0.877 GUYH850103 -0.904
VINM940102 -0.925 PARJ860101 -0.930
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
-0.08 -0.09 -0.70 -0.71 0.76 -0.40 -1.31 -0.84 0.43 1.39
1.24 -0.09 1.27 1.53 -0.01 -0.93 -0.59 2.25 1.53 1.09
//
H CIDH920103
D Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992)
R PMID:1518784
A Cid, H., Bunster, M., Canales, M. and Gazitua, F.
T Hydrophobicity and structural classes in proteins
J Protein Engineering 5, 373-375 (1992)
C CIDH920105 0.973 CIDH920104 0.955 CIDH920102 0.911
NISK860101 0.909 MIYS850101 0.906 MANP780101 0.905
PLIV810101 0.899 PONP930101 0.899 BASU050103 0.894
BASU050101 0.894 RADA880108 0.891 BIOV880101 0.887
BASU050102 0.887 ROBB790101 0.884 WERD780101 0.881
ZHOH040103 0.881 PONP800101 0.876 CIDH920101 0.872
FAUJ830101 0.868 CORJ870107 0.866 ROSM880104 0.866
SWER830101 0.865 CORJ870102 0.864 BIOV880102 0.860
CORJ870104 0.857 CORJ870103 0.856 NISK800101 0.855
PONP800102 0.849 ROSG850102 0.846 GUOD860101 0.845
PONP800108 0.841 BLAS910101 0.838 MEEJ810101 0.837
CORJ870106 0.837 PONP800107 0.833 ROSM880105 0.832
CORJ870105 0.832 ZHOH040101 0.829 CASG920101 0.827
ARGP820101 0.827 JOND750101 0.826 PONP800103 0.823
CORJ870101 0.822 EISD860101 0.821 RADA880102 0.819
LIFS790101 0.815 PTIO830102 0.807 MEIH800103 0.802
FUKS010103 -0.804 PUNT030102 -0.810 KRIW790101 -0.819
PUNT030101 -0.819 PARS000101 -0.821 MEIH800102 -0.825
RACS770102 -0.834 VINM940101 -0.837 FASG890101 -0.846
BULH740101 -0.848 KARP850102 -0.852 VINM940102 -0.855
OOBM770103 -0.863 CORJ870108 -0.864 MIYS990103 -0.870
GRAR740102 -0.871 GUYH850102 -0.871 MIYS990105 -0.876
WOLS870101 -0.879 RACS770101 -0.881 MIYS990104 -0.883
GUYH850103 -0.890 MIYS990102 -0.899 MIYS990101 -0.900
MEIH800101 -0.905 PARJ860101 -0.916
I A/L R/K N/M D/F C/P Q/S E/T G/W H/Y I/V
0.36 -0.52 -0.90 -1.09 0.70 -1.05 -0.83 -0.82 0.16 2.17
1.18 -0.56 1.21 1.01 -0.06 -0.60 -1.20 1.31 1.05 1.21
//
H CIDH920104
D Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992)
R PMID:1518784
A Cid, H., Bunster, M., Canales, M. and Gazitua, F.
T Hydrophobicity and structural classes in proteins
J Protein Engineering 5, 373-375 (1992)
C CIDH920105 0.970 CIDH920103 0.955 NISK860101 0.944
ZHOH040103 0.941 BASU050103 0.941 BASU050102 0.934
BIOV880101 0.933 PONP930101 0.930 FAUJ830101 0.922
MANP780101 0.918 BASU050101 0.917 MIYS850101 0.915
RADA880108 0.914 PONP800108 0.909 CIDH920102 0.904
ROBB790101 0.903 CASG920101 0.903 NISK800101 0.900
ROSG850102 0.896 CORJ870101 0.896 WERD780101 0.896
PLIV810101 0.893 BIOV880102 0.890 PONP800101 0.888
NADH010104 0.888 NADH010103 0.885 BLAS910101 0.881
PONP800102 0.880 MEEJ810101 0.878 NADH010105 0.869
NADH010101 0.865 PONP800103 0.863 SWER830101 0.862
ROSM880104 0.860 CORJ870102 0.860 GUOD860101 0.860
ZHOH040101 0.858 NADH010102 0.856 ROSM880105 0.855
MEIH800103 0.853 PTIO830102 0.842 CORJ870103 0.841
MEEJ810102 0.837 CORJ870107 0.835 EISD860103 0.834
CIDH920101 0.833 PONP800107 0.832 JURD980101 0.832
CORJ870104 0.832 LIFS790101 0.832 KYTJ820101 0.824
ARGP820101 0.819 JOND750101 0.818 RADA880102 0.817
EISD860101 0.812 BAEK050101 0.809 JANJ780102 0.803
COWR900101 0.803 DESM900102 0.802 KARP850101 -0.801
GUYH850101 -0.821 KUHL950101 -0.822 WOEC730101 -0.823