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reduce.c
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reduce.c
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#if defined(__STDC__)
# if (__STDC_VERSION__ >= 199901L)
# define _XOPEN_SOURCE 700
# endif
#endif
#include <stdio.h>
#include <math.h>
#include "allvars.h"
#include "proto.h"
//#include "mypapi.h"
#if defined(DEBUG)
double check_host_value = 0;
double check_global_value = 0;
#endif
struct { double rtime, ttotal, treduce, tspin, tspin_in, tmovmemory, tsum;} timing_red = {0};
struct { double tmpi, tmpi_reduce, tmpi_reduce_wait, tmpi_setup;} timing_redmpi = {0};
int_t summations = 0;
int_t memmoves = 0;
int shmem_reduce_ring ( int, int, int_t, map_t *, double * restrict, blocks_t *);
int reduce_ring (int target_rank)
{
/* -------------------------------------------------
*
* USE THE SHARED MEMORY WINDOWS TO REDUCE DATA
* ------------------------------------------------- */
/*
numa_init( rank, size, &MYMPI_COMM_WORLD, &Me );
numa_allocate_shared_windows( &Me, size_of_grid*sizeof(double), sizeof(double));
memset( (char*)Me.win.ptr, 0, size_of_grid*sizeof(double)*1.1);
if( Me.Rank[myHOST] == 0 )
{
for( int tt = 1; tt < Me.Ntasks[myHOST]; tt++ )
memset( (char*)Me.swins[tt].ptr, 0, size_of_grid*sizeof(double)*1.1);
}
numa_expose(&Me, verbose_level);
MPI_Barrier(MPI_COMM_WORLD);
if( Me.Rank[HOSTS] >= 0 )
requests = (MPI_Request *)calloc( Me.Ntasks[WORLD], sizeof(MPI_Request) );
if( Me.Rank[myHOST] == 0 ) {
*((int*)win_ctrl_hostmaster_ptr+CTRL_BARRIER_END) = 0;
*((int*)win_ctrl_hostmaster_ptr+CTRL_BARRIER_START) = 0;
}
*((int*)Me.win_ctrl.ptr + CTRL_FINAL_STATUS) = FINAL_FREE;
*((int*)Me.win_ctrl.ptr + CTRL_FINAL_CONTRIB) = 0;
*((int*)Me.win_ctrl.ptr + CTRL_SHMEM_STATUS) = -1;
MPI_Barrier(*(Me.COMM[myHOST]));
blocks.Nblocks = Me.Ntasks[myHOST];
blocks.Bstart = (int_t*)calloc( blocks.Nblocks, sizeof(int_t));
blocks.Bsize = (int_t*)calloc( blocks.Nblocks, sizeof(int_t));
int_t size_b = size_of_grid / blocks.Nblocks;
int_t rem = size_of_grid % blocks.Nblocks;
blocks.Bsize[0] = size_b + (rem > 0);
blocks.Bstart[0] = 0;
for(int b = 1; b < blocks.Nblocks; b++ ) {
blocks.Bstart[b] = blocks.Bstart[b-1]+blocks.Bsize[b-1];
blocks.Bsize[b] = size_b + (b < rem); }
*/
timing_red.rtime = CPU_TIME_rt;
timing_red.ttotal = CPU_TIME_pr;
#pragma omp parallel num_threads(2)
{
#ifdef _OPENMP
int thid = omp_get_thread_num();
#else
int thid = 0;
#endif
int Ntasks_local = Me.Ntasks[Me.SHMEMl];
if( thid == 1 )
{
// check that the data in Me.win
// can be overwritten by new data
// -> this condition is true when
// win_ctrl has the value "DATA_FREE"
if( Ntasks_local > 1 )
{
int value = target_rank * Ntasks_local;
for ( int jj = 0; jj < Me.Ntasks[Me.SHMEMl]; jj++ )
*((int*)Me.win_ctrl.ptr+CTRL_BLOCKS+jj) = value;
atomic_store((_Atomic int*)Me.win_ctrl.ptr+CTRL_FINAL_CONTRIB, 0);
//atomic_thread_fence(memory_order_release);
atomic_store((_Atomic int*)Me.win_ctrl.ptr+CTRL_SHMEM_STATUS, value);
//CPU_TIME_STAMP( Me.Rank[myHOST], "A0");
// calls the reduce
double start = CPU_TIME_tr;
int ret = shmem_reduce_ring( target_rank, target_rank, size_of_grid, &Me, (double*)Me.win.ptr, &blocks );
timing_red.treduce += CPU_TIME_tr - start;
reduce_shmem_time = timing_red.treduce;
if( ret != 0 )
{
printf("Task %d : shared-memory reduce for sector %d has returned "
"an error code %d : better stop here\n",
rank, target_rank, ret );
free( blocks.Bsize );
free( blocks.Bstart );
numa_shutdown(rank, 0, &MYMPI_COMM_WORLD, &Me);
MPI_Finalize();
}
}
else
{
ACQUIRE_CTRL((_Atomic int*)Me.win_ctrl.ptr+CTRL_FINAL_STATUS, FINAL_FREE, timing_red.tspin, != );
// mimic the production of new data
//memcpy(Me.win.ptr, gridss, sizeof(gridss));
atomic_store(((_Atomic int*)Me.win_ctrl.ptr+CTRL_FINAL_CONTRIB), Ntasks_local);
}
int Im_target = (rank == target_rank);
int Im_NOT_target_but_Im_master = (Me.Nhosts>1) &&
(Me.Ranks_to_host[target_rank]!=Me.myhost) && (Me.Rank[myHOST]==0);
if( Im_target || Im_NOT_target_but_Im_master )
{
ACQUIRE_CTRL((_Atomic int*)Me.win_ctrl.ptr+CTRL_FINAL_CONTRIB, Ntasks_local, timing_red.tspin, !=);
atomic_store(((_Atomic int*)Me.win_ctrl.ptr+CTRL_FINAL_STATUS), target_rank);
}
atomic_fetch_add( (_Atomic int*)win_ctrl_hostmaster_ptr+CTRL_BARRIER_END, (int)1 );
switch( Me.Rank[Me.SHMEMl] ) {
case 0: { ACQUIRE_CTRL((_Atomic int*)win_ctrl_hostmaster_ptr+CTRL_BARRIER_END, Ntasks_local, timing_red.tspin, !=);
atomic_store( (_Atomic int*)win_ctrl_hostmaster_ptr+CTRL_BARRIER_END, (int)0 ); } break;
default : ACQUIRE_CTRL((_Atomic int*)win_ctrl_hostmaster_ptr+CTRL_BARRIER_END, 0, timing_red.tspin, !=); break;
}
}
else
{
/*
*
* REDUCE AMONG HOSTS
*/
if ( (Me.Nhosts > 1) && (Me.Rank[myHOST] == 0) )
{
double start = CPU_TIME_tr;
int target_task = Me.Ranks_to_host[target_rank];
int Im_hosting_target = Me.Ranks_to_host[target_rank] == Me.myhost;
int target = 0;
if( Im_hosting_target )
while( (target < Me.Ntasks[Me.SHMEMl]) &&
(Me.Ranks_to_myhost[target] != target_rank) )
target++;
_Atomic int *ctrl_ptr = (_Atomic int*)Me.scwins[target].ptr+CTRL_FINAL_STATUS;
double *send_buffer = ( Im_hosting_target ? MPI_IN_PLACE : (double*)Me.win.ptr+size_of_grid );
double *recv_buffer = ( Im_hosting_target ? (double*)Me.sfwins[target].ptr : NULL );
timing_redmpi.tmpi_setup += CPU_TIME_tr - start;
double tstart = CPU_TIME_tr;
ACQUIRE_CTRL( ctrl_ptr, target_rank, timing_red.tspin, !=);
timing_redmpi.tmpi_reduce_wait += CPU_TIME_tr - tstart;
tstart = CPU_TIME_tr;
MPI_Ireduce(send_buffer, recv_buffer, size_of_grid, MPI_DOUBLE, MPI_SUM, target_task, COMM[HOSTS], &requests[target_rank]);
timing_redmpi.tmpi_reduce += CPU_TIME_tr - tstart;
MPI_Wait( &requests[target_rank], MPI_STATUS_IGNORE );
atomic_store(ctrl_ptr, FINAL_FREE);
//printf("Im after MPI_Ireduce and my global rank %d and local rank %d\n", rank, Me.Rank[HOSTS]);
timing_redmpi.tmpi += CPU_TIME_tr - start;
reduce_mpi_time = timing_redmpi.tmpi;
}
atomic_thread_fence(memory_order_release);
} // closes thread 0
}
timing_red.rtime = CPU_TIME_rt - timing_red.rtime;
timing_red.ttotal = CPU_TIME_pr - timing_red.ttotal;
return 0;
}
int shmem_reduce_ring( int sector, int target_rank, int_t size_of_grid, map_t *Me, double * restrict data, blocks_t *blocks )
{
int local_rank = Me->Rank[Me->SHMEMl];
int target_rank_on_myhost = 0;
int Im_hosting_target = 0;
if( Me->Ranks_to_host[ target_rank ] == Me->myhost )
// exchange rank 0 with target rank
// in this way the following log2 alogorithm,
// which reduces to rank 0, will work for
// every target rank
{
Im_hosting_target = 1;
target_rank_on_myhost = 0;
while( (target_rank_on_myhost < Me->Ntasks[Me->SHMEMl]) &&
(Me->Ranks_to_myhost[target_rank_on_myhost] != target_rank) )
target_rank_on_myhost++;
if( target_rank_on_myhost == Me->Ntasks[Me->SHMEMl] )
return -1;
}
// Here we start the reduction
//
dprintf(1, 0, 0, "@ SEC %d t %d (%d), %d\n",
sector, local_rank, rank, *(int*)Me->win_ctrl.ptr);
// main reduction loop
//
int SHMEMl = Me->SHMEMl;
int Nt = Me->Ntasks[SHMEMl];
int end = Me->Ntasks[SHMEMl]-1;
int target = (Nt+(local_rank-1)) % Nt;
int myblock = local_rank;
int ctrl = sector*Nt;
//CPU_TIME_STAMP( local_rank, "R0");
ACQUIRE_CTRL( ((_Atomic int*)Me->scwins[target].ptr)+CTRL_SHMEM_STATUS, ctrl, timing_red.tspin_in, != ); // is my target ready?
for(int t = 0; t < end; t++)
{
// prepare pointers for the summation loop
int_t dsize = blocks->Bsize[myblock];
double * restrict my_source = (double*)Me->swins[target].ptr + blocks->Bstart[myblock];
double * restrict my_target = data + blocks->Bstart[myblock];
my_source = __builtin_assume_aligned( my_source, 8);
my_target = __builtin_assume_aligned( my_target, 8);
dprintf(1, 0, 0, "+ SEC %d host %d l %d t %d <-> %d block %d from %llu to %llu\n",
sector, Me->myhost, t, local_rank, target, myblock,
blocks->Bstart[myblock], blocks->Bstart[myblock]+dsize );
// check whether the data of the source rank
// are ready to be used (control tag must have
// the value of the current sector )
//CPU_TIME_STAMP( local_rank, "R1");
ACQUIRE_CTRL( ((_Atomic int*)Me->scwins[target].ptr)+CTRL_BLOCKS+myblock, ctrl, timing_red.tspin_in, !=); // is myblock@Me ready?
//CPU_TIME_STAMP( local_rank, "R2");
// performs the summation loop
//
#if defined(USE_PAPI)
if( sector == 0 ) {
PAPI_START_CNTR;
summations += dsize; }
#else
summations += dsize;
#endif
double tstart = CPU_TIME_tr;
double *my_end = my_source+dsize;
switch( dsize < BUNCH_FOR_VECTORIZATION )
{
case 0: {
int dsize_4 = (dsize/4)*4;
double * my_end_4 = my_source+dsize_4;
for( ; my_source < my_end_4; my_source+=4, my_target+=4 )
{
__builtin_prefetch( my_target+8, 0, 1);
__builtin_prefetch( my_source+8, 0, 1);
*my_target += *my_source;
*(my_target+1) += *(my_source+1);
*(my_target+2) += *(my_source+2);
*(my_target+3) += *(my_source+3);
} }
case 1: { for( ; my_source < my_end; my_source++, my_target++)
*my_target += *my_source; } break;
}
timing_red.tsum += CPU_TIME_tr - tstart;
#if defined(USE_PAPI)
if( sector == 0 )
PAPI_STOP_CNTR;
#endif
ctrl++;
atomic_store( ((_Atomic int*)Me->win_ctrl.ptr+CTRL_BLOCKS+myblock), ctrl );
//CPU_TIME_STAMP( local_rank, "R3");
dprintf(1, 0, 0, "- SEC %d host %d l %d t %d ... writing tag %d on block %d = %d\n",
sector, Me->myhost, t, local_rank, ctrl, myblock,
*((int*)Me->win_ctrl.ptr+CTRL_BLOCKS+myblock) );
myblock = (Nt+(myblock-1)) % Nt;
atomic_thread_fence(memory_order_release);
}
myblock = (myblock+1)%Nt;
int_t offset = blocks->Bstart[myblock];
int_t dsize = blocks->Bsize[myblock];
dprintf(1,0,0, "c SEC %d host %d t %d (%d) ==> t %d, block %d %llu from %llu\n",
sector, Me->myhost, local_rank, rank, target_rank_on_myhost, myblock, dsize, offset );
double tstart2 = CPU_TIME_tr;
double * restrict my_source = data+offset;
double * my_end = my_source+dsize;
double * restrict my_final;
switch( Im_hosting_target ) {
case 0: my_final = (double*)Me->swins[0].ptr+size_of_grid+offset; break;
case 1: my_final = (double*)Me->sfwins[target_rank_on_myhost].ptr+offset; }
my_source = __builtin_assume_aligned( my_source, 8);
my_final = __builtin_assume_aligned( my_final, 8);
atomic_thread_fence(memory_order_acquire);
ACQUIRE_CTRL((_Atomic int*)Me->scwins[target_rank_on_myhost].ptr+CTRL_FINAL_STATUS, FINAL_FREE, timing_red.tspin_in, != );
switch( dsize < BUNCH_FOR_VECTORIZATION ) {
case 0: { double *end_4 = my_source + (dsize/4)*4;
for( ; my_source < end_4; my_source+=4, my_final+=4) {
*my_final = *my_source; *(my_final+1) = *(my_source+1);
*(my_final+2) = *(my_source+2); *(my_final+3) = *(my_source+3); } }
case 1: { for ( ; my_source < my_end; my_source++, my_final++ ) *my_final = *my_source; } break;
}
atomic_fetch_add((_Atomic int*)Me->scwins[target_rank_on_myhost].ptr+CTRL_FINAL_CONTRIB, (int)1);
timing_red.tmovmemory += CPU_TIME_tr - tstart2;
memmoves += dsize;
//atomic_thread_fence(memory_order_release);
return 0;
}