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fix(qc_reads.smk): corret FastQ collection
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The clean_names rule removes the need to use an input fuction.
Rather, they can be collected with wildcards,
which, I feel, improves readability.
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rbpatt2019 committed Dec 7, 2021
1 parent c8612fb commit a4938a6
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflow/rules/qc_reads.smk
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
rule fastqc:
input:
get_fastqs,
fastq="data/{sample}_S1_L00{lane}_{read}_001.fastq.gz",
output:
html="results/fastqc/{lane}_{sample}_{read}.html",
zip="results/fastqc/{lane}_{sample}_{read}_fastqc.zip",
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