Releases · IMSY-DKFZ/simpa

Changes

Merge develop into main @kdreher (#383)
T317 refactor point source manual test @cbender98 (#385)
T378 2D vs 3D example @jgroehl (#379)
Use same FOV definition within different reconstructions @TomTomRixRix (#181)
Include environment variables in path manager order @TomTomRixRix (#347)
T 371 segmentation loader with multiple wavelengths @frisograce (#372)
Refactored (base) classes from init.py into separate files @TomTomRixRix (#360)
refine benchmarking scripts @frisograce (#369)
Fix ignored acoustical_simulation_3d @faberno (#251)
T115 include bvf @jnoelke (#182)
T105 overview manual test @cbender98 (#318)
Additional executable flags @TomTomRixRix (#311)
Change folder name for pre commit configs @jnoelke (#335)
Add installed simpa version in hdf5 files @jnoelke (#325)
T350 hetero segmentation @frisograce (#351)
T338 msot acuity usable for hetero tissues @frisograce (#341)
T333 new documentation @frisograce (#336)
- RingIlluminationGeometry @RecurvedBow (#293)
Disabled autopep8 formatting of relative import lines @TomTomRixRix (#331)
fix tests @jnoelke (#328)
Refactored component settings and torch device @TomTomRixRix (#309)
Added function for general tissue definition from optical parameters … @RecurvedBow (#326)
Update documentation @jnoelke (#308)
switch to setuptools @jnoelke (#306)
T314 remove fillers @frisograce (#315)
Replace scipy.interp2d by scipy.RegularGridInterpolator @faberno (#312)
FIX issue with SPIE link check @jnoelke (#320)
Saving norm in a variable named norm_direction_vector_mm @Kamkarl (#247)
Fixed time spacing bug in reconstruction convenience function @TomTomRixRix (#261)
raise valueerror if interpolated wavelengths are out of range and wri… @jnoelke (#310)
added missing spacing to error message @faberno (#250)
Fix test_instantiate_when_file_is_in_simpa_home @faberno (#281)
T279 planar illumination geometry @RecurvedBow (#282)
PathManager refactoring @leoyala (#296)
Add profile decorator to simpa utils @lkeegan (#241)
Update test_vesseltree.py @jgroehl (#298)
Minimal optical simulation example and diffuse reflectance @leoyala (#263)
T285 vessel structure to torch @frisograce (#287)
T291 image heterogeneity @frisograce (#295)
Changing operation to make it compatible with M1 Macbooks @frisograce (#289)
Merge fix for #273 from develop @kdreher (#274)
Merge develop @kdreher (#268)
Use mcx SLIT source for MSOTAcuity and MSOTInvision sources @lkeegan (#266)
Update develop @kdreher (#267)
Use gpu for noise generation if available @lkeegan (#253)
Specify mc2 output file format for mcx @lkeegan (#246)
Create simulation volumes on the GPU @lkeegan (#243)
Reduce gpu ram use in EllipticalTubularStructure @lkeegan (#242)
don't run pypi publish action on forks @lkeegan (#244)
T239 wavelength independent volume creation @kdreher (#240)
Fix relative path issue in reconstruction_module_time_reversal_adapter.py matlab command @lkeegan (#235)
Improve generate_mcx_bin_input performance @lkeegan (#236)
speed up assert_array_well_defined() @lkeegan (#238)
Structure creation on GPU @TomTomRixRix (#175)
Develop @kdreher (#231)
T217 GaussianBeam bug + focal length @faberno (#218)
T199: using rfft and window function correction (considering edge cases) @cbender98 (#200)
Merge develop into main @kdreher (#230)
Update issue templates @seitela (#209)
T202 head and neck @mschllnbrg (#203)
T206 io bottleneck @jnoelke (#207)
Develop @kdreher (#225)
Add pre-commit hooks to the repo @TomTomRixRix (#212)
Bump markdown-it-py from 2.1.0 to 2.2.0 @dependabot (#213)
Improve performance and reduce memory use of mcx io @lkeegan (#224)
Develop @kdreher (#197)
T191 numpy types @kdreher (#196)
T187 bump jdata version (#188) @leoyala (#190)
T187 bump jdata version @leoyala (#188)
T77 off by one error @TomTomRixRix (#174)
T152 processing unit @TomTomRixRix (#169)
Develop merge @kdreher (#170)
Citation of SIMPA paper @TomTomRixRix (#167)
Update README.md @chiarasfour (#161)
T128 bf component settings bug and T127 Reconstruction volume dimensions not mandatory @Holzwarth69126 (#133)
T152 notify cpu reconstruction @Holzwarth69126 (#153)
Implemented #144, partial volume via settings @jnoelke (#145)
Add version number in hdf5 @jnoelke (#147)
Run Tests on push and pull request to develop as well. @jgroehl (#151)
Develop @kdreher (#150)
Fixed detector positioning in msot acuity echo @kdreher (#149)
Fixes #142 @kdreher (#148)
Fixed test that would have detected #139 @kdreher (#143)
Merge T139_AnisotropyBug into develop @mschllnbrg (#140)
Rounding issues in reconstruction @TomTomRixRix (#135)
Update InVision device parameters @jgroehl (#130)
Offer option to resample to power of 2 in bandpass filter @TomTomRixRix (#125)
Merge develop into main @kdreher (#122)
T118 fix device positioning @kdreher (#119)