From b5f4e496dd827d327cd979c9cb69c9082fa2e4d2 Mon Sep 17 00:00:00 2001 From: Harry Caufield Date: Thu, 15 Feb 2024 14:35:21 -0500 Subject: [PATCH 1/2] Add link to ODK Docker image --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 65a2ad7..a9efbc4 100644 --- a/README.md +++ b/README.md @@ -138,7 +138,7 @@ This assumes `foo.owl` is in the same folder There are two docker images that can be used: -- ODK +- [ODK](https://hub.docker.com/r/obolibrary/odkfull) - [semantic-sql](https://hub.docker.com/repository/docker/linkml/semantic-sql) The ODK image may lag behind From a2e00f354eb363e871cebaf5df184314420ce36c Mon Sep 17 00:00:00 2001 From: Harry Caufield Date: Thu, 15 Feb 2024 14:39:30 -0500 Subject: [PATCH 2/2] URLs for hp.db -> hp.db.gz --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index a9efbc4..30f81b4 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ sqlite> SELECT * FROM rdfs_label_statement WHERE value LIKE 'Abnormality of %'; |HP:0000032|HP:0000032|rdfs:label||Abnormality of male external genitalia|xsd:string|| -Ready-made SQLite3 builds can also be downloaded for any ontology in [OBO](http://obofoundry.org), using URLs such as https://s3.amazonaws.com/bbop-sqlite/hp.db +Ready-made SQLite3 builds can also be downloaded for any ontology in [OBO](http://obofoundry.org), using URLs such as https://s3.amazonaws.com/bbop-sqlite/hp.db.gz [relation-graph](https://github.com/balhoff/relation-graph/) is used to pre-generate tables of [entailed edges](https://incatools.github.io/semantic-sql/EntailedEdge/). For example, all is-a and part-of ancestors of [finger](http://purl.obolibrary.org/obo/UBERON_0002389) in Uberon: @@ -73,7 +73,7 @@ semsql download obi -o obi.db Or simply download using URL of the form: -- https://s3.amazonaws.com/bbop-sqlite/hp.db +- https://s3.amazonaws.com/bbop-sqlite/hp.db.gz ## Attaching databases