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Welcome to the BaseSpace Clarity LIMS GitHub repository!

The aim is to have code examples and API libraries hosted centrally here.

Currently, you will find the mature glsapiutil.py library which should be used for production code.

You will also find glsapiutil3.py, which is currently a bleeding-edge alpha version of a library that works with both Python v2 and v3. It is currently lacking some error-checking code and extra functionality present in the mature library, so please use it at your own risk!

Initialising and using the API object (glsapiutil3)

The new API object can be initialised in two ways:

  1. The old (glsapiutil.py) way:
api = glsapiutil3.glsapiutil3()
api.setHostname('https://demo-5-lite.claritylims.com')
api.setVersion('v2')
api.setup( username = 'apiuser', password = 'apipass')
  1. The slick new way which saves time in cases where a script has a step or process URI provided to it:
api = glsapiutil3.glsapiutil3()
api.setup( username = 'apiuser', password = 'apipass', 
          sourceURI = 'https://demo-5-lite.claritylims.com/api/v2/steps/24-1234' )

The Python console will provide helpful logging messages once the object gets initialised.

From this point, the function calls are exactly like the previous version's API object:

api.GET()
api.POST()
api.PUT()

The big advantage, of course, is that this new library works with Python 2 and 3, allowing scripts to be more easily ported.

This is a living repository and will be updated with more details, documentation, and examples as we centralise more code.