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build-test-publish.yml
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name: Build, test, publish
on: [push,pull_request]
env:
itk-git-tag: "v5.4.0"
jobs:
build-test-cxx:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-22.04, windows-2022, macos-12]
include:
- os: ubuntu-22.04
c-compiler: "gcc"
cxx-compiler: "g++"
cmake-build-type: "MinSizeRel"
- os: windows-2022
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
cmake-build-type: "Release"
- os: macos-12
c-compiler: "clang"
cxx-compiler: "clang++"
cmake-build-type: "MinSizeRel"
steps:
- uses: actions/checkout@v3
with:
path: Ex
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ninja
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@v3.24.2
- name: Download ITK
run: |
cd ..
git clone https://github.com/InsightSoftwareConsortium/ITK.git
cd ITK
git checkout ${{ env.itk-git-tag }}
- name: Build ITK
if: matrix.os != 'windows-2022'
run: |
cd ..
mkdir ITK-build
cd ITK-build
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
ninja
- name: Build ITK
if: matrix.os == 'windows-2022'
run: |
cd ..
mkdir ITK-build
cd ITK-build
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF -GNinja ../ITK
ninja
shell: cmd
- name: Fetch CTest driver script
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
- name: Configure CTest script
shell: bash
run: |
mv Ex ../../
operating_system="${{ matrix.os }}"
cat > dashboard.cmake << EOF
set(CTEST_SITE "GitHubActions")
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../Ex" CTEST_SOURCE_DIRECTORY)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../bld/" CTEST_BINARY_DIRECTORY)
set(dashboard_source_name "${GITHUB_REPOSITORY}")
if(ENV{GITHUB_REF} MATCHES "master")
set(branch "-master")
set(dashboard_model "Continuous")
else()
set(branch "-${GITHUB_REF}")
set(dashboard_model "Experimental")
endif()
set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
set(CTEST_UPDATE_VERSION_ONLY 1)
set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
set(CTEST_BUILD_CONFIGURATION "Release")
set(CTEST_CMAKE_GENERATOR "Ninja")
set(CTEST_CUSTOM_WARNING_EXCEPTION
\${CTEST_CUSTOM_WARNING_EXCEPTION}
# macOS Azure VM Warning
"ld: warning: text-based stub file"
)
set(dashboard_no_clean 1)
set(ENV{CC} ${{ matrix.c-compiler }})
set(ENV{CXX} ${{ matrix.cxx-compiler }})
set(dashboard_cache "
ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build
BUILD_TESTING:BOOL=ON
")
string(TIMESTAMP build_date "%Y-%m-%d")
message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
message("CTEST_SITE = \${CTEST_SITE}")
include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
EOF
cat dashboard.cmake
- name: Build and test
if: matrix.os != 'windows-2022'
run: |
ctest -j 2 -VV -S dashboard.cmake
- name: Build and test
if: matrix.os == 'windows-2022'
run: |
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
ctest -j 2 -VV -S dashboard.cmake
shell: cmd
build-test-python-superbuild:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-22.04, windows-2022, macos-12]
include:
- os: ubuntu-22.04
c-compiler: "gcc"
cxx-compiler: "g++"
cmake-build-type: "MinSizeRel"
- os: windows-2022
c-compiler: "cl.exe"
cxx-compiler: "cl.exe"
cmake-build-type: "Release"
- os: macos-12
c-compiler: "clang"
cxx-compiler: "clang++"
cmake-build-type: "MinSizeRel"
steps:
- uses: actions/checkout@v3
with:
path: Ex
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ninja
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@v3.24.2
- name: Fetch CTest driver script
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKSphinxExamples/dashboard/itkexamples_common.cmake -O
- name: Configure CTest script
shell: bash
run: |
mv Ex ../../
operating_system="${{ matrix.os }}"
cat > dashboard.cmake << EOF
set(CTEST_SITE "GitHubActions")
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../Ex" CTEST_SOURCE_DIRECTORY)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../bld/" CTEST_BINARY_DIRECTORY)
set(dashboard_superbuild 1)
if(ENV{GITHUB_REF} MATCHES "master")
set(branch "-master")
set(dashboard_model "Continuous")
else()
set(branch "-${GITHUB_REF}")
set(dashboard_model "Experimental")
endif()
set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}")
set(CTEST_UPDATE_VERSION_ONLY 1)
set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
set(CTEST_BUILD_CONFIGURATION "Release")
set(CTEST_CMAKE_GENERATOR "Ninja")
set(CTEST_CUSTOM_WARNING_EXCEPTION
\${CTEST_CUSTOM_WARNING_EXCEPTION}
# macOS Azure VM Warning
"ld: warning: text-based stub file"
)
set(dashboard_no_clean 1)
set(ENV{CC} ${{ matrix.c-compiler }})
set(ENV{CXX} ${{ matrix.cxx-compiler }})
if(WIN32)
set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}")
endif()
set(dashboard_cache "
USE_GIT_PROTOCOL:BOOL=OFF
BUILD_TESTING:BOOL=ON
")
string(TIMESTAMP build_date "%Y-%m-%d")
message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
message("CTEST_SITE = \${CTEST_SITE}")
include(\${CTEST_SCRIPT_DIRECTORY}/itkexamples_common.cmake)
EOF
cat dashboard.cmake
- name: Build and test
if: matrix.os != 'windows-2022'
run: |
ctest -j 2 -VV -S dashboard.cmake
- name: Build and test
if: matrix.os == 'windows-2022'
run: |
call "C:\Program Files\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat"
ctest -j 2 -VV -S dashboard.cmake
shell: cmd
build-test-notebooks:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-22.04, windows-2022, macos-12]
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Install build dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ninja
python -m pip install itk>=5.4rc3
python -m pip install matplotlib
python -m pip install itkwidgets
# Issues with 5.7.0
# https://github.com/InsightSoftwareConsortium/ITKSphinxExamples/issues/407
python -m pip install traitlets==5.6.0 pytest nbmake
- name: Test notebooks
run: |
pytest --nbmake --nbmake-timeout=30000
build-test-documentation:
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 3
matrix:
os: [ubuntu-22.04]
include:
- os: ubuntu-22.04
c-compiler: "gcc"
cxx-compiler: "g++"
cmake-build-type: "Release"
steps:
- uses: actions/checkout@v3
with:
path: Ex
submodules: recursive
- name: Set up Python 3.9
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Get specific version of CMake, Ninja
uses: lukka/get-cmake@v3.24.2
- name: Install build dependencies
run: |
sudo apt-get update
sudo apt-get install gnuplot dvipng
sudo apt-get install texlive-full
sudo apt-get install curl
curl -LO https://github.com/jgm/pandoc/releases/download/3.1.6/pandoc-3.1.6-1-amd64.deb
sudo apt-get install ./pandoc-3.1.6-1-amd64.deb
sudo apt-get install imagemagick
python -m pip install --upgrade pip
python -m pip install ninja
python -m pip install 'sphinx==7.2.6'
python -m pip install --ignore-installed six
python -m pip install ipython
echo "Workspace: ${{ github.workspace }}"
- name: Remove Duplicate Declaration Warnings
run: |
SITE_PACKAGES_DIR=$(python3 "-c" "from distutils import sysconfig; print(sysconfig.get_python_lib())")
sed -i "6559d" ${SITE_PACKAGES_DIR}/sphinx/domains/cpp.py
- name: Fetch CTest driver script
run: |
curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKSphinxExamples/dashboard/itkexamples_common.cmake -O
- name: Configure CTest script
shell: bash
run: |
mv Ex ../../
operating_system="${{ matrix.os }}"
cat > dashboard.cmake << EOF
set(CTEST_SITE "GitHubActions")
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../Ex" CTEST_SOURCE_DIRECTORY)
file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../../bld/" CTEST_BINARY_DIRECTORY)
set(dashboard_superbuild 1)
if(ENV{GITHUB_REF} MATCHES "master")
set(branch "-master")
set(dashboard_model "Continuous")
else()
set(branch "-${GITHUB_REF}")
set(dashboard_model "Experimental")
endif()
set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}-docs")
set(CTEST_UPDATE_VERSION_ONLY 1)
set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL})
set(CTEST_BUILD_CONFIGURATION "Release")
set(CTEST_CMAKE_GENERATOR "Ninja")
set(CTEST_CUSTOM_WARNING_EXCEPTION
\${CTEST_CUSTOM_WARNING_EXCEPTION}
# macOS Azure VM Warning
"ld: warning: text-based stub file"
# breathelink warning
"WARNING: Duplicate C"
)
set(dashboard_no_clean 1)
set(ENV{CC} ${{ matrix.c-compiler }})
set(ENV{CXX} ${{ matrix.cxx-compiler }})
if(WIN32)
set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}")
endif()
set(dashboard_cache "
USE_GIT_PROTOCOL:BOOL=OFF
BUILD_TESTING:BOOL=ON
BUILD_DOCUMENTATION:BOOL=ON
")
string(TIMESTAMP build_date "%Y-%m-%d")
message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}")
message("CTEST_SITE = \${CTEST_SITE}")
include(\${CTEST_SCRIPT_DIRECTORY}/itkexamples_common.cmake)
EOF
cat dashboard.cmake
- name: Build and test
run: |
ctest -j 2 -VV -S dashboard.cmake
- name: Publish Documentation html as GitHub Artifact
uses: actions/upload-artifact@v3
with:
name: Documentation
path: |
/home/runner/work/bld/ITKEx-build/ITKSphinxExamples-*-html.tar.gz
/home/runner/work/bld/ITKEx-build/ITKSphinxExamples-*-html.zip
- name: Unpack site
shell: bash
run: |
mkdir ${{ github.workspace }}/site
echo "Unpack to ${{ github.workspace }}/site"
tar --strip-components=1 -xf /home/runner/work/bld/ITKEx-build/ITKSphinxExamples-*-html.tar.gz -C ${{ github.workspace }}/site
- name: Deploy website to Netlify
uses: nwtgck/actions-netlify@v1.1.13
with:
publish-dir: '${{ github.workspace }}/site'
production-branch: master
production-deploy: true
github-token: ${{ secrets.GITHUB_TOKEN }}
deploy-message: ${{ github.event.pull_request.title }})
enable-pull-request-comment: true
enable-commit-comment: true
overwrites-pull-request-comment: true
env:
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
timeout-minutes: 5