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Biological invasions as burdens to primary economic sectors

Repo to accompany the manuscript by Anna J. Turbelin*, Emma J. Hudgins*, Jane A. Catford, Ross N. Cuthbert, Christophe Diagne, Melina Kourantidou, David Roiz, and Franck Courchamp https://doi.org/10.21203/rs.3.rs-2444595/v1

* co-first authorship

preprint available at: XXXX

scripts:

  • Data cleaning script: R_Script_S1_Invacost_ActivitySectors.R
  • Modelling script: extrapolation_script.R
  • STAN models used in modelling script: .stan files

data:

  • CABI database: cabi_by_sector_v2.csv
  • sTwist database: SInAS_AlienSpeciesDB_2.4.1.csv and sTwist_database.csv (older version with more descriptor columns)
  • taxonomic groupings: species_coarse_categories_IC4_1.xlsx
  • full taxonomy by sector: .RDS files
  • pathways: Pathways_4_1.csv

output:

  • data_pred* by sector - set of data used for extrapolation
  • predicted_costs* by sector - extrapolated costs
  • brt_glob.csv - relative influence results of BRT model (also in relinf.pdf)
  • cost_by_continent_sector.rds - extrapolated BRT costs by continent and sector
  • *_bayes.pdf - model averaging result for extrapolated cost distribuion in distributional scenario