Skip to content

Latest commit

 

History

History
29 lines (17 loc) · 1.77 KB

README.md

File metadata and controls

29 lines (17 loc) · 1.77 KB

Ubitrail

A versatile and robust open-source behavioural tracking system aimed at quantifying 2D locomotion in insects. The software uses a dynamic learning algorithm to gather information about the animals being tracked and improve its performance on the fly. Built in C++ using the open-source computer vision library, OpenCV.

Current features:

  • Inputs video files (.avi, .mp4); real-time processing (e.g. from live webcam feed) not currently supported
  • Analyse 48+ areas simultaneously in one video, provided one object per area
  • Automatic recognition of circular areas; use of custom mask for more complex experimental designs
  • Robust to heterogeneous and fluctuating conditions (e.g. changes in lighting, moderate changes in background).
  • Data processing and ready-made outputs available using integrated R package, 'RUbitrail'

Sample images

GUI during analysis of a setup consisting of 6 Petri dishes, each containing an adult Tenebrio molitor beetle.

GUI_6

Tracking video during analysis a setup consisting a 12-well plate, with each well containing a Drosophila melanogaster adult. Each well subdivided to denote sub-territories (pink and indigo circles); here, plain water and sugar water.

GUI_12_sub

Sample outputs

Heatmap

A sample heatmap from an experimental design with 6 areas, overlaid onto a frame taken from the video. Yellow shows areas visited most frequently, blue less frequently.

heatmap