Bump rpy2 from 3.5.11 to 3.5.13

[dependabot]

Bumps rpy2 from 3.5.11 to 3.5.13.

Release notes

Sourced from rpy2's releases.

Release 3.5.13

Release 3.5.13
==============
New features

R is setting a number of environment variables in a wrapper script. Those
variables were not set by default by rpy2 and this could lead to issues (see issue #1033).
The variables are now added to os.environ.

Bugs fixed

python -m rpy2.situation LD_LIBRARY_PATH could incorrectly truncate the value
for LD_LIBRARY_PATH when the variable LD_LIBRARY_PATH is already defined.

Changes


The dependency on :mod:pytz, a deprecated package, was
removed and replaced by a dependency to :mod:zoneinfo.
If Python < 3.9 the package :mod:backports.zoneinfo
is an added dependency.


The depency on :mod:tzlocal does no longer limit it
to &lt;5.0 (issue #1035).


Remove dependency on :mod:distutils in Python's standard library. That package is
deprecated and removed in Python 3.12 (see https://peps.python.org/pep-0632/ and
issue #1040).

Changelog

Sourced from rpy2's changelog.

Release 3.5.13

New features

• R is setting a number of environment variables in a wrapper script. Those variables were not set by default by rpy2 and this could lead to issues (see issue #1033). The variables are now added to os.environ.

Bugs fixed

• python -m rpy2.situation LD_LIBRARY_PATH could incorrectly truncate the value for LD_LIBRARY_PATH when the variable LD_LIBRARY_PATH is already defined.

Changes

• The dependency on :mod:pytz, a deprecated package, was removed and replaced by a dependency to :mod:zoneinfo. If Python < 3.9 the package :mod:backports.zoneinfo is an added dependency.

• The depency on :mod:tzlocal does no longer limit it to <5.0 (issue #1035).

• Remove dependency on :mod:distutils in Python's standard library. That package is deprecated and removed in Python 3.12 (see https://peps.python.org/pep-0632/ and issue #1040).

Release 3.5.12

New features

• :func:rpy2.rinterface.evalr_expr_with_visible to evaluate an expression and return the visibility status of the value returned.

• More events in the intialization and termination of an embedded R logged by :mod:rpy2.rinterface_lib.embedded.logger at INFO and DEBUG levels.

• :meth:rpy2.robjects.R.__call__ has 2 named arguments "visible" and "print_r_warnings" to handle R "invisible" results and print R warnings at the end of the evaluation. Invisible results happen when doing rpy2.robjects.r("x <- 1"). R will return the value of x "invisibly".

... (truncated)

Commits

• See full diff in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot will merge this PR once CI passes on it, as requested by @JoranAngevaare.

---

Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

• @dependabot rebase will rebase this PR
• @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
• @dependabot merge will merge this PR after your CI passes on it
• @dependabot squash and merge will squash and merge this PR after your CI passes on it
• @dependabot cancel merge will cancel a previously requested merge and block automerging
• @dependabot reopen will reopen this PR if it is closed
• @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
• @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
• @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
• @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
• @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

[JoranAngevaare]

@dependabot squash and merge