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1.6.0-DEV-f410aaa11c.log
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Julia Version 1.6.0-DEV.1222
Commit f410aaa11c (2020-10-14 16:26 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
Resolving package versions...
Installed Missings ───────────────────── v0.4.4
Installed SortingAlgorithms ──────────── v0.3.1
Installed OpenBLAS_jll ───────────────── v0.3.10+0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Compat ─────────────────────── v2.2.1
Installed SpecialFunctions ───────────── v0.9.0
Installed FlashWeave ─────────────────── v0.17.0
Installed Rmath ──────────────────────── v0.6.1
Installed CodecZlib ──────────────────── v0.7.0
Installed OrderedCollections ─────────── v1.3.1
Installed Combinatorics ──────────────── v1.0.2
Installed HDF5 ───────────────────────── v0.12.5
Installed ArnoldiMethod ──────────────── v0.0.4
Installed BinaryProvider ─────────────── v0.5.10
Installed StaticArrays ───────────────── v0.12.4
Installed Inflate ────────────────────── v0.1.2
Installed CMakeWrapper ───────────────── v0.2.4
Installed TranscodingStreams ─────────── v0.9.5
Installed JSON ───────────────────────── v0.21.1
Installed DataAPI ────────────────────── v1.3.0
Installed FileIO ─────────────────────── v1.4.3
Installed MacroTools ─────────────────── v0.5.5
Installed JLLWrappers ────────────────── v1.1.2
Installed URIParser ──────────────────── v0.4.1
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed FillArrays ─────────────────── v0.8.14
Installed JLD2 ───────────────────────── v0.1.14
Installed QuadGK ─────────────────────── v2.4.1
Installed CMake ──────────────────────── v1.2.0
Installed SimpleWeightedGraphs ───────── v1.1.1
Installed StatsBase ──────────────────── v0.32.2
Installed Zlib_jll ───────────────────── v1.2.11+17
Installed Arpack ─────────────────────── v0.4.0
Installed LightGraphs ────────────────── v1.3.3
Installed BinDeps ────────────────────── v1.0.1
Installed PDMats ─────────────────────── v0.9.12
Installed Parsers ────────────────────── v1.0.11
Installed UnPack ─────────────────────── v1.0.2
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Blosc ──────────────────────── v0.5.1
Installed SimpleTraits ───────────────── v0.9.3
Installed DataStructures ─────────────── v0.17.20
Installed Distributions ──────────────── v0.21.12
Installed Parameters ─────────────────── v0.12.1
Installed StatsFuns ──────────────────── v0.9.5
Updating `~/.julia/environments/v1.6/Project.toml`
[2be3f83a] + FlashWeave v0.17.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[9e28174c] + BinDeps v1.0.1
[b99e7846] + BinaryProvider v0.5.10
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.2.0
[d5fb7624] + CMakeWrapper v0.2.4
[944b1d66] + CodecZlib v0.7.0
[861a8166] + Combinatorics v1.0.2
[34da2185] + Compat v2.2.1
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.20
[31c24e10] + Distributions v0.21.12
[5789e2e9] + FileIO v1.4.3
[1a297f60] + FillArrays v0.8.14
[2be3f83a] + FlashWeave v0.17.0
[f67ccb44] + HDF5 v0.12.5
[d25df0c9] + Inflate v0.1.2
[033835bb] + JLD2 v0.1.14
[692b3bcd] + JLLWrappers v1.1.2
[682c06a0] + JSON v0.21.1
[093fc24a] + LightGraphs v1.3.3
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.4
[4536629a] + OpenBLAS_jll v0.3.10+0
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.11
[1fd47b50] + QuadGK v2.4.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[699a6c99] + SimpleTraits v0.9.3
[47aef6b3] + SimpleWeightedGraphs v1.1.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.32.2
[4c63d2b9] + StatsFuns v0.9.5
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.1
[3a884ed6] + UnPack v1.0.2
[83775a58] + Zlib_jll v1.2.11+17
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CMake → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50a8b41d2c562fccd9ab841085fc7d1e2706da82/build.log`
Building Blosc → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/71fb23581e1f0b0ae7be8ccf0ebfb3600e23ca41/build.log`
Building HDF5 ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/d3ea5532668bf9bdd5e8d5f16571e0b520cbbb9f/build.log`
Precompiling project... (tip: to disable auto-precompilation set ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0)
[90m[32m ✓ [39mDataAPI[39m
[90m[32m ✓ [39mBlosc[39m
[90m[32m ✓ [39mJLLWrappers[39m
[90m[32m ✓ [39mInflate[39m
[90m[32m ✓ [39mCombinatorics[39m
[90m[32m ✓ [39mMissings[39m
[90m[32m ✓ [39mTranscodingStreams[39m
[90m[32m ✓ [39mFillArrays[39m
[90m[32m ✓ [39mRmath_jll[39m
[90m[32m ✓ [39mCompilerSupportLibraries_jll[39m
[90m[32m ✓ [39mZlib_jll[39m
[90m[32m ✓ [39mRmath[39m
[90m[32m ✓ [39mCodecZlib[39m
[90m[32m ✓ [39mDataStructures[39m
[90m[32m ✓ [39mParsers[39m
[90m[32m ✓ [39mMacroTools[39m
[90m[32m ✓ [39mOpenSpecFun_jll[39m
[90m[32m ✓ [39mOpenBLAS_jll[39m
[90m[32m ✓ [39mSortingAlgorithms[39m
[90m[32m ✓ [39mJSON[39m
[90m[32m ✓ [39mQuadGK[39m
[90m[32m ✓ [39mArpack_jll[39m
[90m[32m ✓ [39mFileIO[39m
[90m[32m ✓ [39mHDF5[39m
[90m[32m ✓ [39mSimpleTraits[39m
[90m[32m ✓ [39mArpack[39m
[90m[32m ✓ [39mStaticArrays[39m
[90m[32m ✓ [39mStatsBase[39m
[90m[32m ✓ [39mSpecialFunctions[39m
[90m[32m ✓ [39mPDMats[39m
[90m[32m ✓ [39mJLD2[39m
[90m[32m ✓ [39mStatsFuns[39m
[90m[32m ✓ [39mArnoldiMethod[39m
[90m[32m ✓ [39mDistributions[39m
[90m[32m ✓ [39mLightGraphs[39m
[90m[32m ✓ [39mSimpleWeightedGraphs[39m
[32m ✓ [39mFlashWeave
37 dependencies successfully precompiled (9 already precompiled)
Testing FlashWeave
Status `/tmp/jl_JqPy5X/Project.toml`
[861a8166] Combinatorics v1.0.2
[864edb3b] DataStructures v0.17.20
[31c24e10] Distributions v0.21.12
[5789e2e9] FileIO v1.4.3
[2be3f83a] FlashWeave v0.17.0
[f67ccb44] HDF5 v0.12.5
[033835bb] JLD2 v0.1.14
[682c06a0] JSON v0.21.1
[093fc24a] LightGraphs v1.3.3
[47aef6b3] SimpleWeightedGraphs v1.1.1
[2913bbd2] StatsBase v0.32.2
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[9a3f8284] Random
[1a1011a3] SharedArrays
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_JqPy5X/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[9e28174c] BinDeps v1.0.1
[b99e7846] BinaryProvider v0.5.10
[a74b3585] Blosc v0.5.1
[631607c0] CMake v1.2.0
[d5fb7624] CMakeWrapper v0.2.4
[944b1d66] CodecZlib v0.7.0
[861a8166] Combinatorics v1.0.2
[34da2185] Compat v2.2.1
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.17.20
[31c24e10] Distributions v0.21.12
[5789e2e9] FileIO v1.4.3
[1a297f60] FillArrays v0.8.14
[2be3f83a] FlashWeave v0.17.0
[f67ccb44] HDF5 v0.12.5
[d25df0c9] Inflate v0.1.2
[033835bb] JLD2 v0.1.14
[692b3bcd] JLLWrappers v1.1.2
[682c06a0] JSON v0.21.1
[093fc24a] LightGraphs v1.3.3
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.4
[4536629a] OpenBLAS_jll v0.3.10+0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.11
[1fd47b50] QuadGK v2.4.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[699a6c99] SimpleTraits v0.9.3
[47aef6b3] SimpleWeightedGraphs v1.1.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.32.2
[4c63d2b9] StatsFuns v0.9.5
[3bb67fe8] TranscodingStreams v0.9.5
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v1.0.2
[83775a58] Zlib_jll v1.2.11+17
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Preparing tests
Test Summary: | Pass Total
all modules in testset | 1 1
Testing io.jl
Test Summary: | Pass Total
networks | 4 4
Test Summary: | Pass Total
table data | 20 20
┌ Warning: jld2 support is deprecated and will be removed in future versions of FlashWeave
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/io.jl:42
Test Summary: | Pass Total
transposed | 8 8
Test Summary: | Pass Total
string factors | 4 4
Test Summary: | Pass Total
numeric IDs | 2 2
Testing preprocessing.jl
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: adaptive pseudo-counts for 1 samples were lower than machine precision due to insufficient counts, removing them
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:125
Test Summary: | Pass Total
clr_adapt eps | 2 2
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
Test Summary: | Pass Total
norm per test type | 20 20
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
Test Summary: | Pass Total
filter data | 12 12
Test Summary: | Pass Total
mi_nz fits fz_nz | 1 1
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:345
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:345
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:345
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:345
Test Summary: | Pass Total
meta data | 18 18
Testing contingency.jl
Test Summary: | Pass Total
dense | 4 4
Test Summary: | Pass Total
sparse | 4 4
Testing statfuns.jl
Test Summary: | Pass Total
correlation | 6 6
Test Summary: | Pass Total
mutual information | 4 4
Test Summary: | Pass Total
FDR correction | 2 2
Testing tests.jl
Test Summary: | Pass Total
mi | 3 3
Test Summary: | Pass Total
mi_nz | 3 3
Test Summary: | Pass Total
fz | 3 3
Test Summary: | Pass Total
fz_nz | 3 3
Testing misc.jl
Testing learning.jl
(this can take a couple of minutes)
Test Summary: | Pass Total
univar nbrs | 5 5
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
Test Summary: | Pass Total
LGL_backend | 80 80
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
Test Summary: | Pass Total
precision_32 | 4 4
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/learning.jl:71
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:63
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:63
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:63
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:63
Test Summary: | Pass Total
learn_network | 12 12
Test Summary: | Pass Total
duplicates | 1 1
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/OSMRc/src/preprocessing.jl:479
Test Summary: | Pass Total
convergence | 1 1
Test Summary: | Pass Total
hiton msg | 1 1
Finished testing (took 125s)
Testing FlashWeave tests passed