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1.6.0-DEV-cbd854b0f4.log
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Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed LabelledArrays ─────────────── v1.2.1
Installed FieldMetadata ──────────────── v0.2.0
Installed BSON ───────────────────────── v0.2.6
Installed RecipesBase ────────────────── v1.0.1
Installed OrderedCollections ─────────── v1.2.0
Installed SLEEFPirates ───────────────── v0.5.0
Installed AIBECS ─────────────────────── v0.5.0
Installed MbedTLS_jll ────────────────── v2.16.0+2
Installed Compat ─────────────────────── v3.10.0
Installed AxisAlgorithms ─────────────── v1.0.0
Installed Ratios ─────────────────────── v0.4.0
Installed CpuId ──────────────────────── v0.2.2
Installed DocStringExtensions ────────── v0.8.1
Installed HTTP ───────────────────────── v0.8.15
Installed StatsBase ──────────────────── v0.33.0
Installed DataFrames ─────────────────── v0.21.2
Installed Flatten ────────────────────── v0.3.4
Installed Reexport ───────────────────── v0.2.0
Installed CommonSubexpressions ───────── v0.2.0
Installed PDMats ─────────────────────── v0.9.12
Installed DataValueInterfaces ────────── v1.0.0
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed ArrayInterface ─────────────── v2.8.7
Installed FunctionWrappers ───────────── v1.1.1
Installed DiffRules ──────────────────── v1.0.1
Installed QuadGK ─────────────────────── v2.3.1
Installed StaticArrays ───────────────── v0.12.3
Installed LoopVectorization ──────────── v0.8.3
Installed InvertedIndices ────────────── v1.0.0
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed PooledArrays ───────────────── v0.5.3
Installed LoggingExtras ──────────────── v0.4.1
Installed TableTraits ────────────────── v1.0.0
Installed RecursiveArrayTools ────────── v2.4.1
Installed ProgressLogging ────────────── v0.1.2
Installed VectorizationBase ──────────── v0.12.6
Installed DataDeps ───────────────────── v0.7.2
Installed CategoricalArrays ──────────── v0.8.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed IniFile ────────────────────── v0.5.0
Installed SIMDPirates ────────────────── v0.8.6
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed MacroTools ─────────────────── v0.5.5
Installed Rmath ──────────────────────── v0.6.1
Installed DataStructures ─────────────── v0.17.17
Installed Parameters ─────────────────── v0.12.1
Installed ChainRulesCore ─────────────── v0.8.0
Installed IterativeSolvers ───────────── v0.8.4
Installed JSON ───────────────────────── v0.21.0
Installed Distances ──────────────────── v0.9.0
Installed MbedTLS ────────────────────── v1.0.2
Installed UnPack ─────────────────────── v1.0.1
Installed ZygoteRules ────────────────── v0.2.0
Installed MuladdMacro ────────────────── v0.2.2
Installed Roots ──────────────────────── v1.0.1
Installed TerminalLoggers ────────────── v0.1.1
Installed ForwardDiff ────────────────── v0.10.10
Installed NaNMath ────────────────────── v0.3.3
Installed Unitful ────────────────────── v1.2.1
Installed Distributions ──────────────── v0.23.4
Installed ProgressMeter ──────────────── v1.3.0
Installed MetadataArrays ─────────────── v0.1.0
Installed OpenBLAS_jll ───────────────── v0.3.9+4
Installed WoodburyMatrices ───────────── v0.5.2
Installed OceanGrids ─────────────────── v0.2.0
Installed Tables ─────────────────────── v1.0.4
Installed FillArrays ─────────────────── v0.8.10
Installed OffsetArrays ───────────────── v1.0.4
Installed Requires ───────────────────── v1.0.1
Installed Arpack ─────────────────────── v0.4.0
Installed Parsers ────────────────────── v1.0.5
Installed AbstractTrees ──────────────── v0.3.3
Installed DataAPI ────────────────────── v1.3.0
Installed TreeViews ──────────────────── v0.3.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DiffResults ────────────────── v1.0.2
Installed UnitfulRecipes ─────────────── v0.2.4
Installed ConstructionBase ───────────── v1.0.0
Installed Missings ───────────────────── v0.4.3
Installed RecursiveFactorization ─────── v0.1.2
Installed IteratorInterfaceExtensions ── v1.0.0
Installed StatsFuns ──────────────────── v0.9.5
Installed SpecialFunctions ───────────── v0.10.3
Installed DiffEqBase ─────────────────── v6.36.3
Installed Interpolations ─────────────── v0.12.10
Updating `~/.julia/environments/v1.6/Project.toml`
[ace601d6] + AIBECS v0.5.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[ace601d6] + AIBECS v0.5.0
[1520ce14] + AbstractTrees v0.3.3
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4fba245c] + ArrayInterface v2.8.7
[13072b0f] + AxisAlgorithms v1.0.0
[fbb218c0] + BSON v0.2.6
[324d7699] + CategoricalArrays v0.8.1
[d360d2e6] + ChainRulesCore v0.8.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v3.10.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[187b0558] + ConstructionBase v1.0.0
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[124859b0] + DataDeps v0.7.2
[a93c6f00] + DataFrames v0.21.2
[864edb3b] + DataStructures v0.17.17
[e2d170a0] + DataValueInterfaces v1.0.0
[2b5f629d] + DiffEqBase v6.36.3
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.9.0
[31c24e10] + Distributions v0.23.4
[ffbed154] + DocStringExtensions v0.8.1
[bf96fef3] + FieldMetadata v0.2.0
[1a297f60] + FillArrays v0.8.10
[4c728ea3] + Flatten v0.3.4
[f6369f11] + ForwardDiff v0.10.10
[069b7b12] + FunctionWrappers v1.1.1
[cd3eb016] + HTTP v0.8.15
[83e8ac13] + IniFile v0.5.0
[a98d9a8b] + Interpolations v0.12.10
[41ab1584] + InvertedIndices v1.0.0
[42fd0dbc] + IterativeSolvers v0.8.4
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[2ee39098] + LabelledArrays v1.2.1
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[e6f89c97] + LoggingExtras v0.4.1
[bdcacae8] + LoopVectorization v0.8.3
[1914dd2f] + MacroTools v0.5.5
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.0+2
[49441bc9] + MetadataArrays v0.1.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.2
[77ba4419] + NaNMath v0.3.3
[cfe838f4] + OceanGrids v0.2.0
[6fe1bfb0] + OffsetArrays v1.0.4
[4536629a] + OpenBLAS_jll v0.3.9+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.2.0
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.5
[2dfb63ee] + PooledArrays v0.5.3
[33c8b6b6] + ProgressLogging v0.1.2
[92933f4c] + ProgressMeter v1.3.0
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v1.0.1
[731186ca] + RecursiveArrayTools v2.4.1
[f2c3362d] + RecursiveFactorization v0.1.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[f2b01f46] + Roots v1.0.1
[21efa798] + SIMDPirates v0.8.6
[476501e8] + SLEEFPirates v0.5.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.3
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[5d786b92] + TerminalLoggers v0.1.1
[a2a6695c] + TreeViews v0.3.0
[3a884ed6] + UnPack v1.0.1
[1986cc42] + Unitful v1.2.1
[42071c24] + UnitfulRecipes v0.2.4
[3d5dd08c] + VectorizationBase v0.12.6
[efce3f68] + WoodburyMatrices v0.5.2
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building VectorizationBase → `~/.julia/packages/VectorizationBase/SyqTC/deps/build.log`
Building SLEEFPirates ─────→ `~/.julia/packages/SLEEFPirates/mkNmA/deps/build.log`
Testing AIBECS
Status `/tmp/jl_jDwn9B/Project.toml`
[ace601d6] AIBECS v0.5.0
[fbb218c0] BSON v0.2.6
[124859b0] DataDeps v0.7.2
[a93c6f00] DataFrames v0.21.2
[2b5f629d] DiffEqBase v6.36.3
[b4f34e82] Distances v0.9.0
[31c24e10] Distributions v0.23.4
[fa6b7ba4] DualNumbers v0.6.2
[bf96fef3] FieldMetadata v0.2.0
[4c728ea3] Flatten v0.3.4
[f6369f11] ForwardDiff v0.10.10
[a98d9a8b] Interpolations v0.12.10
[49441bc9] MetadataArrays v0.1.0
[cfe838f4] OceanGrids v0.2.0
[91a5bcdd] Plots v1.3.7
[3cdcf5f2] RecipesBase v1.0.1
[189a3867] Reexport v0.2.0
[3a884ed6] UnPack v1.0.1
[1986cc42] Unitful v1.2.1
[42071c24] UnitfulRecipes v0.2.4
[04f20302] WorldOceanAtlasTools v0.3.1
[37e2e46d] LinearAlgebra
[de0858da] Printf
[2f01184e] SparseArrays
[4607b0f0] SuiteSparse
[8dfed614] Test
Status `/tmp/jl_jDwn9B/Manifest.toml`
[ace601d6] AIBECS v0.5.0
[1520ce14] AbstractTrees v0.3.3
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.8.7
[13072b0f] AxisAlgorithms v1.0.0
[fbb218c0] BSON v0.2.6
[9e28174c] BinDeps v1.0.1
[6e34b625] Bzip2_jll v1.0.6+2
[179af706] CFTime v0.1.0
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.8.1
[d360d2e6] ChainRulesCore v0.8.0
[35d6a980] ColorSchemes v3.9.0
[3da002f7] ColorTypes v0.10.3
[5ae59095] Colors v0.12.1
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v3.10.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[a9693cdc] CondaBinDeps v0.2.0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.0.0
[d38c429a] Contour v0.5.3
[adafc99b] CpuId v0.2.2
[9a962f9c] DataAPI v1.3.0
[124859b0] DataDeps v0.7.2
[a93c6f00] DataFrames v0.21.2
[864edb3b] DataStructures v0.17.17
[e2d170a0] DataValueInterfaces v1.0.0
[2b5f629d] DiffEqBase v6.36.3
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.0
[31c24e10] Distributions v0.23.4
[ffbed154] DocStringExtensions v0.8.1
[fa6b7ba4] DualNumbers v0.6.2
[c87230d0] FFMPEG v0.3.0
[b22a6f82] FFMPEG_jll v4.1.0+3
[bf96fef3] FieldMetadata v0.2.0
[1a297f60] FillArrays v0.8.10
[53c48c17] FixedPointNumbers v0.8.0
[4c728ea3] Flatten v0.3.4
[f6369f11] ForwardDiff v0.10.10
[d7e528f0] FreeType2_jll v2.10.1+2
[559328eb] FriBidi_jll v1.0.5+3
[069b7b12] FunctionWrappers v1.1.1
[28b8d3ca] GR v0.50.1
[4d00f742] GeometryTypes v0.8.3
[cd3eb016] HTTP v0.8.15
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.10
[41ab1584] InvertedIndices v1.0.0
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[c1c5ebd0] LAME_jll v3.100.0+1
[2ee39098] LabelledArrays v1.2.1
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[dd192d2f] LibVPX_jll v1.8.1+1
[e6f89c97] LoggingExtras v0.4.1
[bdcacae8] LoopVectorization v0.8.3
[1914dd2f] MacroTools v0.5.5
[7eb4fadd] Match v1.1.0
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.0+2
[442fdcdd] Measures v0.3.1
[49441bc9] MetadataArrays v0.1.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.2
[85f8d34a] NCDatasets v0.10.2
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.5
[cfe838f4] OceanGrids v0.2.0
[6fe1bfb0] OffsetArrays v1.0.4
[e7412a2a] Ogg_jll v1.3.4+0
[4536629a] OpenBLAS_jll v0.3.9+4
[458c3c95] OpenSSL_jll v1.1.1+2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[91d4177d] Opus_jll v1.3.1+1
[bac558e1] OrderedCollections v1.2.0
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.5
[ccf2f8ad] PlotThemes v2.0.0
[995b91a9] PlotUtils v1.0.4
[91a5bcdd] Plots v1.3.7
[2dfb63ee] PooledArrays v0.5.3
[33c8b6b6] ProgressLogging v0.1.2
[92933f4c] ProgressMeter v1.3.0
[1fd47b50] QuadGK v2.3.1
[c84ed2f1] Ratios v0.4.0
[3cdcf5f2] RecipesBase v1.0.1
[01d81517] RecipesPipeline v0.1.10
[731186ca] RecursiveArrayTools v2.4.1
[f2c3362d] RecursiveFactorization v0.1.2
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[f2b01f46] Roots v1.0.1
[21efa798] SIMDPirates v0.8.6
[476501e8] SLEEFPirates v0.5.0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.3
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[5d786b92] TerminalLoggers v0.1.1
[a2a6695c] TreeViews v0.3.0
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v1.0.1
[1986cc42] Unitful v1.2.1
[42071c24] UnitfulRecipes v0.2.4
[3d5dd08c] VectorizationBase v0.12.6
[81def892] VersionParsing v1.2.0
[efce3f68] WoodburyMatrices v0.5.2
[04f20302] WorldOceanAtlasTools v0.3.1
[83775a58] Zlib_jll v1.2.11+10
[700de1a5] ZygoteRules v0.2.0
[0ac62f75] libass_jll v0.14.0+2
[f638f0a6] libfdk_aac_jll v0.1.6+2
[f27f6e37] libvorbis_jll v1.3.6+4
[1270edf5] x264_jll v2019.5.25+2
[dfaa095f] x265_jll v3.0.0+1
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Creating 2-box model ✔
┌ Info: You are about to use the 2-box model of Sarmiento and Gruber [2006].
│ If you use it for research, please cite:
│
│ - Sarmiento, Jorge L., and Nicolas Gruber. Ocean biogeochemical dynamics. Princeton University Press, 2006.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Sarmiento_Gruber_2006" key.)
Divergence timescale: Inf Myr
Mass conservation timescale: Inf Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
Creating 6-box model ✔
┌ Info: You are about to use the 3-box model of Archer et al. [2000].
│ If you use it for research, please cite:
│
│ - Archer, D. E., Eshel, G., Winguth, A., Broecker, W., Pierrehumbert, R., Tobis, M., and Jacob, R. (2000), Atmospheric pCO2 sensitivity to the biological pump in the ocean, Global Biogeochem. Cycles, 14 (4), 1219–1230, doi:10.1029/1999GB001216.
│
│ You can find the corresponding BibTeX entry in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
│ (Look for the "Archer_etal_2000" key.)
│
│ Note that although this model represents the 3-box model of Archer et al. [2000],
│ it effectively requires 6 boxes to represent in the AIBECS,
│ so that particulate sinking flux divergence operators can be built.
└ (See the comments at the start of the Archer_etal_2000.jl file for details.)
Divergence timescale: 2.618654665745728e9 Myr
Mass conservation timescale: 1.1325608935745733e10 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
Loading OCIM1 ✔
┌ Info: You are about to use OCIM1 model.
│ If you use it for research, please cite:
│
│ - DeVries, T., 2014: The oceanic anthropogenic CO2 sink: Storage, air‐sea fluxes, and transports over the industrial era, Global Biogeochem. Cycles, 28, 631–647, doi:10.1002/2013GB004739.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "DeVries_2014" keys.)
Divergence timescale: 56.88633505066291 Myr
Mass conservation timescale: 1.5924997910682485e7 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
Loading OCIM0.1 ✔
┌ Info: You are about to use OCIM0.1 model.
│ If you use it for research, please cite:
│
│ - Primeau, F. W., Holzer, M., and DeVries, T. (2013), Southern Ocean nutrient trapping and the efficiency of the biological pump, J. Geophys. Res. Oceans, 118, 2547–2564, doi:10.1002/jgrc.20181.
│ - DeVries, T. and F. Primeau, 2011: Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean. J. Phys. Oceanogr., 41, 2381–2401, doi:10.1175/JPO-D-10-05011.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Primeau_2011" and "Primeau_etal_2013" keys.)
Divergence timescale: 4918.412202633426 Myr
Mass conservation timescale: 1.1589255527365623e9 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "ad02765d92ecdaafac3c9e238bcc28b39908d26746d190958ff64808d050d2c7"
└ @ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/verification.jl:44
┌ Info: You are about to use the OCCA model.
│ If you use it for research, please cite:
│
│ - Forget, G., 2010: Mapping Ocean Observations in a Dynamical Framework: A 2004–06 Ocean Atlas. J. Phys. Oceanogr., 40, 1201–1221, https://doi.org/10.1175/2009JPO4043.1
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "Forget_2010" key.)
Divergence timescale: 1.7451675993471023e7 Myr
Mass conservation timescale: 0.07893326563268274 Myr
Test Summary: | Pass Total
test setup.jl only | 17 17
┌ Info: You are about to use the OCIM2_CTL_He model.
│ If you use it for research, please cite:
│
│ - DeVries, T., & Holzer, M. (2019). Radiocarbon and helium isotope constraints on deep ocean ventilation and mantle‐³He sources. Journal of Geophysical Research: Oceans, 124, 3036–3057. https://doi.org/10.1029/2018JC014716
│
│ You can find the corresponding BibTeX entries in the CITATION.bib file
│ at the root of the AIBECS.jl package repository.
└ (Look for the "DeVries_Holzer_2019" key.)
Divergence timescale: 56.82128130650262 Myr
Mass conservation timescale: 1.6438802905113876e7 Myr
Test Summary: | Pass Total
Test setup and plots | 55 55
Creating François Primeau's 2x2x2 model ✔
Divergence timescale: 2.2842804373910645e11 Myr
Mass conservation timescale: 1.2598347527548342e12 Myr
TestParameters{Float64}
│ Row │ Symbol │ Value │ Initial value │ Unit │ Prior │ Description │ Optimizable │
│ │ Symbol │ Float64 │ Float64 │ Any │ Any │ String │ Bool │
├─────┼────────┼──────────┼───────────────┼───────────┼───────────────────────────────────────┼─────────────────────────────────────────────┼─────────────┤
│ 1 │ xgeo │ 2.17 │ 2.17 │ mmol m^-3 │ LogNormal{Float64}(μ=-6.13303, σ=1.0) │ Geological mean P concentration │ 1 │
│ 2 │ τgeo │ 1.0 │ 1.0 │ Myr │ │ Geological restoring timescale │ 0 │
│ 3 │ k │ 10.0 │ 10.0 │ μmol m^-3 │ LogNormal{Float64}(μ=-11.5129, σ=1.0) │ Half-saturation constant (Michaelis-Menten) │ 1 │
│ 4 │ z₀ │ 80.0 │ 80.0 │ m │ │ Depth of the euphotic layer base │ 0 │
│ 5 │ w₀ │ 1.0 │ 1.0 │ m d^-1 │ LogNormal{Float64}(μ=-11.3667, σ=1.0) │ Sinking velocity at surface │ 1 │
│ 6 │ w′ │ 0.22 │ 0.22 │ d^-1 │ LogNormal{Float64}(μ=-12.8809, σ=1.0) │ Vertical gradient of sinking velocity │ 1 │
│ 7 │ τDOP │ 0.25 │ 0.25 │ yr │ LogNormal{Float64}(μ=15.881, σ=1.0) │ Remineralization timescale (DOP to DIP) │ 1 │
│ 8 │ τPOP │ 5.25 │ 5.25 │ d │ LogNormal{Float64}(μ=13.025, σ=1.0) │ Dissolution timescale (POP to DOP) │ 1 │
│ 9 │ σ │ 0.333333 │ 0.333333 │ 1 │ │ Fraction of quick local uptake recycling │ 0 │
│ 10 │ τDIP │ 30.0 │ 30.0 │ d │ LogNormal{Float64}(μ=14.7679, σ=1.0) │ Uptake maximum timescale (DIP to POP) │ 1 │
TestParameters{Dual{Float64}}
│ Row │ Symbol │ Value │ Initial value │ Unit │ Prior │ Description │ Optimizable │
│ │ Symbol │ Dual{Float64} │ Float64 │ Any │ Any │ String │ Bool │
├─────┼────────┼──────────────────┼───────────────┼───────────┼───────────────────────────────────────┼─────────────────────────────────────────────┼─────────────┤
│ 1 │ xgeo │ 2.17+1000.0ɛ │ 2.17 │ mmol m^-3 │ LogNormal{Float64}(μ=-6.13303, σ=1.0) │ Geological mean P concentration │ 1 │
│ 2 │ τgeo │ 1.0+0.0ɛ │ 1.0 │ Myr │ │ Geological restoring timescale │ 0 │
│ 3 │ k │ 10.0+1.0e6ɛ │ 10.0 │ μmol m^-3 │ LogNormal{Float64}(μ=-11.5129, σ=1.0) │ Half-saturation constant (Michaelis-Menten) │ 1 │
│ 4 │ z₀ │ 80.0+0.0ɛ │ 80.0 │ m │ │ Depth of the euphotic layer base │ 0 │
│ 5 │ w₀ │ 1.0+86400.0ɛ │ 1.0 │ m d^-1 │ LogNormal{Float64}(μ=-11.3667, σ=1.0) │ Sinking velocity at surface │ 1 │
│ 6 │ w′ │ 0.22+86400.0ɛ │ 0.22 │ d^-1 │ LogNormal{Float64}(μ=-12.8809, σ=1.0) │ Vertical gradient of sinking velocity │ 1 │
│ 7 │ τDOP │ 0.25+3.16881e-8ɛ │ 0.25 │ yr │ LogNormal{Float64}(μ=15.881, σ=1.0) │ Remineralization timescale (DOP to DIP) │ 1 │
│ 8 │ τPOP │ 5.25+1.15741e-5ɛ │ 5.25 │ d │ LogNormal{Float64}(μ=13.025, σ=1.0) │ Dissolution timescale (POP to DOP) │ 1 │
│ 9 │ σ │ 0.333333+0.0ɛ │ 0.333333 │ 1 │ │ Fraction of quick local uptake recycling │ 0 │
│ 10 │ τDIP │ 30.0+1.15741e-5ɛ │ 30.0 │ d │ LogNormal{Float64}(μ=14.7679, σ=1.0) │ Uptake maximum timescale (DIP to POP) │ 1 │
\begin{tabular}{r|ccccccc}
& Symbol & Value & Initial value & Unit & Prior & Description & Optimizable\\
\hline
& Symbol & Float64 & Float64 & Any & Any & String & Bool\\
\hline
1 & xgeo & 2.17 & 2.17 & mmol m\^-3 & LogNormal\{Float64\}(μ=-6.13303, σ=1.0) & Geological mean P concentration & 1 \\
2 & τgeo & 1.0 & 1.0 & Myr & & Geological restoring timescale & 0 \\
3 & k & 10.0 & 10.0 & μmol m\^-3 & LogNormal\{Float64\}(μ=-11.5129, σ=1.0) & Half-saturation constant (Michaelis-Menten) & 1 \\
4 & z₀ & 80.0 & 80.0 & m & & Depth of the euphotic layer base & 0 \\
5 & w₀ & 1.0 & 1.0 & m d\^-1 & LogNormal\{Float64\}(μ=-11.3667, σ=1.0) & Sinking velocity at surface & 1 \\
6 & w′ & 0.22 & 0.22 & d\^-1 & LogNormal\{Float64\}(μ=-12.8809, σ=1.0) & Vertical gradient of sinking velocity & 1 \\
7 & τDOP & 0.25 & 0.25 & yr & LogNormal\{Float64\}(μ=15.881, σ=1.0) & Remineralization timescale (DOP to DIP) & 1 \\
8 & τPOP & 5.25 & 5.25 & d & LogNormal\{Float64\}(μ=13.025, σ=1.0) & Dissolution timescale (POP to DOP) & 1 \\
9 & σ & 0.333333 & 0.333333 & 1 & & Fraction of quick local uptake recycling & 0 \\
10 & τDIP & 30.0 & 30.0 & d & LogNormal\{Float64\}(μ=14.7679, σ=1.0) & Uptake maximum timescale (DIP to POP) & 1 \\
\end{tabular}
14
Registering WOA data with DataDeps
┌ Warning: Checksum not provided, add to the Datadep Registration the following hash line
│ hash = "53a32321db4115a939f50c8d767f0df4e7263117e4afc8fd98ca861f67223eec"
└ @ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/verification.jl:44
Reading NetCDF file
Rearranging data
Filtering data
Averaging data over each grid box
Setting μ = 0 and σ² = ∞ where no obs
Setting a realistic minimum for σ²
Test Summary: | Pass Total
test everything | 86 86
Testing AIBECS tests passed