-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-cbd854b0f4.log
476 lines (469 loc) · 27.5 KB
/
1.6.0-DEV-cbd854b0f4.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Reexport ───────────────────── v0.2.0
Installed PDMats ─────────────────────── v0.9.12
Installed Compat ─────────────────────── v3.10.0
Installed OrderedCollections ─────────── v1.2.0
Installed BayesNets ──────────────────── v3.2.2
Installed StatsBase ──────────────────── v0.33.0
Installed DataFrames ─────────────────── v0.21.2
Installed Zlib_jll ───────────────────── v1.2.11+10
Installed DataValueInterfaces ────────── v1.0.0
Installed TikzGraphs ─────────────────── v1.1.0
Installed QuadGK ─────────────────────── v2.3.1
Installed InvertedIndices ────────────── v1.0.0
Installed IterTools ──────────────────── v1.3.0
Installed LightXML ───────────────────── v0.9.0
Installed StaticArrays ───────────────── v0.12.3
Installed ArnoldiMethod ──────────────── v0.0.4
Installed TableTraits ────────────────── v1.0.0
Installed XML2_jll ───────────────────── v2.9.9+4
Installed TikzPictures ───────────────── v3.1.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed PooledArrays ───────────────── v0.5.3
Installed MacroTools ─────────────────── v0.5.5
Installed Rmath ──────────────────────── v0.6.1
Installed CategoricalArrays ──────────── v0.8.1
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed SimpleTraits ───────────────── v0.9.2
Installed DataStructures ─────────────── v0.17.17
Installed LaTeXStrings ───────────────── v1.1.0
Installed UnPack ─────────────────────── v1.0.1
Installed Inflate ────────────────────── v0.1.2
Installed Parameters ─────────────────── v0.12.1
Installed JSON ───────────────────────── v0.21.0
Installed Libiconv_jll ───────────────── v1.16.0+2
Installed OpenBLAS_jll ───────────────── v0.3.9+4
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Tables ─────────────────────── v1.0.4
Installed Arpack ─────────────────────── v0.4.0
Installed FillArrays ─────────────────── v0.8.10
Installed Parsers ────────────────────── v1.0.5
Installed Distributions ──────────────── v0.23.4
Installed LightGraphs ────────────────── v1.3.3
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Missings ───────────────────── v0.4.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed DataAPI ────────────────────── v1.3.0
Installed SpecialFunctions ───────────── v0.10.3
Installed Discretizers ───────────────── v3.2.0
Installed StatsFuns ──────────────────── v0.9.5
Updating `~/.julia/environments/v1.6/Project.toml`
[ba4760a4] + BayesNets v3.2.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[ba4760a4] + BayesNets v3.2.2
[324d7699] + CategoricalArrays v0.8.1
[34da2185] + Compat v3.10.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.2
[864edb3b] + DataStructures v0.17.17
[e2d170a0] + DataValueInterfaces v1.0.0
[6e83dbb3] + Discretizers v3.2.0
[31c24e10] + Distributions v0.23.4
[1a297f60] + FillArrays v0.8.10
[d25df0c9] + Inflate v0.1.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.1.0
[94ce4f54] + Libiconv_jll v1.16.0+2
[093fc24a] + LightGraphs v1.3.3
[9c8b4983] + LightXML v0.9.0
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.9+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.2.0
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.5
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.3.1
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[699a6c99] + SimpleTraits v0.9.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.3
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[b4f28e30] + TikzGraphs v1.1.0
[37f6aa50] + TikzPictures v3.1.0
[3a884ed6] + UnPack v1.0.1
[02c8fc9c] + XML2_jll v2.9.9+4
[83775a58] + Zlib_jll v1.2.11+10
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building BayesNets → `~/.julia/packages/BayesNets/XwVs4/deps/build.log`
Testing BayesNets
Status `/tmp/jl_6LsIPu/Project.toml`
[ba4760a4] BayesNets v3.2.2
[a93c6f00] DataFrames v0.21.2
[864edb3b] DataStructures v0.17.17
[6e83dbb3] Discretizers v3.2.0
[31c24e10] Distributions v0.23.4
[c8e1da08] IterTools v1.3.0
[093fc24a] LightGraphs v1.3.3
[9c8b4983] LightXML v0.9.0
[0db19996] NBInclude v2.2.0
[d96e819e] Parameters v0.12.1
[ce6b1742] RDatasets v0.6.8
[189a3867] Reexport v0.2.0
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.0
[b4f28e30] TikzGraphs v1.1.0
[ade2ca70] Dates
[37e2e46d] LinearAlgebra
[de0858da] Printf
[9a3f8284] Random
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_6LsIPu/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[ba4760a4] BayesNets v3.2.2
[336ed68f] CSV v0.6.2
[324d7699] CategoricalArrays v0.8.1
[944b1d66] CodecZlib v0.7.0
[34da2185] Compat v3.10.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.2
[864edb3b] DataStructures v0.17.17
[e2d170a0] DataValueInterfaces v1.0.0
[6e83dbb3] Discretizers v3.2.0
[31c24e10] Distributions v0.23.4
[e2ba6199] ExprTools v0.1.1
[8f5d6c58] EzXML v1.1.0
[5789e2e9] FileIO v1.3.0
[48062228] FilePathsBase v0.8.0
[1a297f60] FillArrays v0.8.10
[d25df0c9] Inflate v0.1.2
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.1.0
[94ce4f54] Libiconv_jll v1.16.0+2
[093fc24a] LightGraphs v1.3.3
[9c8b4983] LightXML v0.9.0
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[78c3b35d] Mocking v0.7.1
[0db19996] NBInclude v2.2.0
[4536629a] OpenBLAS_jll v0.3.9+4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.2.0
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.5
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.3.1
[df47a6cb] RData v0.7.2
[ce6b1742] RDatasets v0.6.8
[3cdcf5f2] RecipesBase v1.0.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[699a6c99] SimpleTraits v0.9.2
[b85f4697] SoftGlobalScope v1.0.10
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.3
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[b4f28e30] TikzGraphs v1.1.0
[37f6aa50] TikzPictures v3.1.0
[f269a46b] TimeZones v1.2.0
[3bb67fe8] TranscodingStreams v0.9.5
[3a884ed6] UnPack v1.0.1
[ea10d353] WeakRefStrings v0.6.2
[02c8fc9c] XML2_jll v2.9.9+4
[83775a58] Zlib_jll v1.2.11+10
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = fit(::Type{StaticCPD{Normal}}, ::DataFrame, ::Symbol, ::Array{Symbol,1}) at static_cpd.jl:28
└ @ BayesNets.CPDs ~/.julia/packages/BayesNets/XwVs4/src/CPDs/static_cpd.jl:28
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_cpds.jl:205
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_cpds.jl:205
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_cpds.jl:206
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_cpds.jl:206
┌ Warning: outer joining data frames using join is deprecated, use `outerjoin(df1, df2, on=["A", "p"], makeunique=true, indicator=nothing, validate=(false, false))` instead
│ caller = ip:0x0
└ @ Core :-1
tables: Error During Test at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:42
Got exception outside of a @test
LoadError: ArgumentError: column name :p_1 not found in the data frame; existing most similar names are: :p
Stacktrace:
[1] lookupname at /home/pkgeval/.julia/packages/DataFrames/kwVTY/src/other/index.jl:289 [inlined]
[2] getindex at /home/pkgeval/.julia/packages/DataFrames/kwVTY/src/other/index.jl:295 [inlined]
[3] getindex(::DataFrame, ::typeof(!), ::Symbol) at /home/pkgeval/.julia/packages/DataFrames/kwVTY/src/dataframe/dataframe.jl:435
[4] *(::Table, ::Table) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/DiscreteBayesNet/tables.jl:45
[5] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_tables.jl:14
[6] include(::String) at ./client.jl:444
[7] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:43
[8] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:43
[10] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[11] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:35
[12] include(::String) at ./client.jl:444
[13] top-level scope at none:6
[14] eval(::Module, ::Any) at ./boot.jl:331
[15] exec_options(::Base.JLOptions) at ./client.jl:260
[16] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_tables.jl:12
┌ Warning: `setindex!(df::DataFrame, v::AbstractVector, col_ind::ColumnIndex)` is deprecated, use `begin
│ df[!, col_ind] = v
│ df
│ end` instead.
│ caller = convert(::Type{DataFrame}, ::Factor) at factors_dataframes.jl:12
└ @ BayesNets ~/.julia/packages/BayesNets/XwVs4/src/Factors/factors_dataframes.jl:12
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_factors.jl:49
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_factors.jl:49
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_factors.jl:49
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_factors.jl:49
gibbs: Error During Test at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:51
Got exception outside of a @test
LoadError: syntax: invalid UTF-8 sequence
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_gibbs.jl:3
[2] include(::String) at ./client.jl:444
[3] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:52
[4] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[5] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:52
[6] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[7] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:35
[8] include(::String) at ./client.jl:444
[9] top-level scope at none:6
[10] eval(::Module, ::Any) at ./boot.jl:331
[11] exec_options(::Base.JLOptions) at ./client.jl:260
[12] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_gibbs.jl:3
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_sampling.jl:13
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_sampling.jl:13
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_sampling.jl:14
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_sampling.jl:14
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = gibbs_sample(::BayesNet{CPD}, ::Int64, ::Int64; thinning::Int64, consistent_with::Dict{Symbol,Any}, variable_order::Nothing, time_limit::Nothing, error_if_time_out::Bool, initial_sample::Nothing, max_cache_size::Nothing) at gibbs.jl:332
└ @ BayesNets ~/.julia/packages/BayesNets/XwVs4/src/gibbs.jl:332
sampling: Error During Test at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:54
Got exception outside of a @test
LoadError: MethodError: Cannot `convert` an object of type String to an object of type Symbol
Closest candidates are:
convert(::Type{S}, !Matched::T) where {S, T<:CategoricalValue} at /home/pkgeval/.julia/packages/CategoricalArrays/nd8kj/src/value.jl:68
convert(::Type{T}, !Matched::T) where T at essentials.jl:171
Symbol(::String) at boot.jl:436
...
Stacktrace:
[1] setindex!(::Dict{Symbol,Any}, ::Int64, ::String) at ./dict.jl:372
[2] sample_weighted_dataframe!(::Dict{Symbol,Any}, ::DataFrame) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/sampling.jl:192
[3] sample_weighted_dataframe at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/sampling.jl:126 [inlined]
[4] gibbs_sample(::BayesNet{CPD}, ::Int64, ::Int64; thinning::Int64, consistent_with::Dict{Symbol,Any}, variable_order::Nothing, time_limit::Nothing, error_if_time_out::Bool, initial_sample::Nothing, max_cache_size::Nothing) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/gibbs.jl:335
[5] rand(::BayesNet{CPD}, ::GibbsSampler, ::Int64) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/gibbs.jl:447
[6] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_sampling.jl:25
[7] include(::String) at ./client.jl:444
[8] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:55
[9] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[10] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:55
[11] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[12] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:35
[13] include(::String) at ./client.jl:444
[14] top-level scope at none:6
[15] eval(::Module, ::Any) at ./boot.jl:331
[16] exec_options(::Base.JLOptions) at ./client.jl:260
[17] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_sampling.jl:1
learning: Error During Test at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:60
Got exception outside of a @test
LoadError: MethodError: no method matching fit(::Type{CategoricalCPD{DiscreteNonParametric{Int64,Float64,Base.OneTo{Int64},Array{Float64,1}}}}, ::DataFrame, ::String, ::Array{String,1})
Closest candidates are:
fit(!Matched::Type{StatsBase.Histogram}, ::Any...; kwargs...) at /home/pkgeval/.julia/packages/StatsBase/unDUx/src/hist.jl:383
fit(!Matched::StatsBase.StatisticalModel, ::Any...) at /home/pkgeval/.julia/packages/StatsBase/unDUx/src/statmodels.jl:152
fit(!Matched::Type{D}, ::Any...) where D<:Distribution at /home/pkgeval/.julia/packages/Distributions/RAeyY/src/genericfit.jl:34
...
Stacktrace:
[1] fit(::Type{BayesNet}, ::DataFrame, ::SimpleDiGraph{Int64}, ::Array{DataType,1}) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/learning.jl:10
[2] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_learning.jl:47
[3] include(::String) at ./client.jl:444
[4] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:61
[5] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[6] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:61
[7] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[8] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:35
[9] include(::String) at ./client.jl:444
[10] top-level scope at none:6
[11] eval(::Module, ::Any) at ./boot.jl:331
[12] exec_options(::Base.JLOptions) at ./client.jl:260
[13] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_learning.jl:5
┌ Warning: `getindex(df::DataFrame, col_ind::ColumnIndex)` is deprecated, use `df[!, col_ind]` instead.
│ caller = top-level scope at test_discrete_bayes_nets.jl:37
└ @ Core ~/.julia/packages/BayesNets/XwVs4/test/test_discrete_bayes_nets.jl:37
discrete bayes: Error During Test at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:69
Got exception outside of a @test
LoadError: MethodError: no method matching fit(::Type{CategoricalCPD{DiscreteNonParametric{Int64,Float64,Base.OneTo{Int64},Array{Float64,1}}}}, ::DataFrame, ::String, ::Array{String,1}, ::UniformPrior; parental_ncategories=[2, 2], target_ncategories=2)
Closest candidates are:
fit(!Matched::Type{StatsBase.Histogram}, ::Any...; kwargs...) at /home/pkgeval/.julia/packages/StatsBase/unDUx/src/hist.jl:383
fit(!Matched::StatsBase.StatisticalModel, ::Any...) at /home/pkgeval/.julia/packages/StatsBase/unDUx/src/statmodels.jl:152 got unsupported keyword arguments "parental_ncategories", "target_ncategories"
fit(!Matched::Type{D}, ::Any...) where D<:Distribution at /home/pkgeval/.julia/packages/Distributions/RAeyY/src/genericfit.jl:34 got unsupported keyword arguments "parental_ncategories", "target_ncategories"
...
Stacktrace:
[1] fit(::Type{BayesNet{CategoricalCPD{DiscreteNonParametric{Int64,Float64,Base.OneTo{Int64},Array{Float64,1}}}}}, ::DataFrame, ::GreedyHillClimbing; ncategories::Array{Int64,1}) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/DiscreteBayesNet/greedy_hill_climbing.jl:132
[2] fit(::Type{BayesNet{CategoricalCPD{DiscreteNonParametric{Int64,Float64,Base.OneTo{Int64},Array{Float64,1}}}}}, ::DataFrame, ::GreedyHillClimbing) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/DiscreteBayesNet/greedy_hill_climbing.jl:66
[3] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_discrete_bayes_nets.jl:83
[4] include(::String) at ./client.jl:444
[5] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:70
[6] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[7] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:70
[8] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[9] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:35
[10] include(::String) at ./client.jl:444
[11] top-level scope at none:6
[12] eval(::Module, ::Any) at ./boot.jl:331
[13] exec_options(::Base.JLOptions) at ./client.jl:260
[14] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_discrete_bayes_nets.jl:71
docs: Error During Test at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:75
Got exception outside of a @test
LoadError: LoadError: MethodError: Cannot `convert` an object of type Nothing to an object of type Int64
Closest candidates are:
convert(::Type{T}, !Matched::T) where T<:Number at number.jl:6
convert(::Type{T}, !Matched::Number) where T<:Number at number.jl:7
convert(::Type{T}, !Matched::Ptr) where T<:Integer at pointer.jl:23
...
Stacktrace:
[1] LightGraphs.SimpleGraphs.SimpleEdge{Int64}(::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/LightGraphs/siFgP/src/SimpleGraphs/simpleedge.jl:7
[2] add_edge!(::SimpleDiGraph{Int64}, ::Nothing, ::Nothing) at /home/pkgeval/.julia/packages/LightGraphs/siFgP/src/SimpleGraphs/SimpleGraphs.jl:90
[3] _get_dag(::DataFrame, ::Tuple{Pair{Symbol,Symbol}}) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/learning.jl:34
[4] fit(::Type{BayesNet}, ::DataFrame, ::Pair{Symbol,Symbol}, ::Array{DataType,1}) at /home/pkgeval/.julia/packages/BayesNets/XwVs4/src/learning.jl:59
[5] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/doc/BayesNets.ipynb:In[17]:2
[6] eval at ./boot.jl:331 [inlined]
[7] include_string(::typeof(identity), ::Module, ::String, ::String) at ./loading.jl:1103
[8] include_string at ./loading.jl:1113 [inlined]
[9] my_include_string(::Module, ::String, ::String, ::String, ::Bool) at /home/pkgeval/.julia/packages/NBInclude/mNhzW/src/NBInclude.jl:29
[10] nbinclude(::Module, ::String; renumber::Bool, counters::UnitRange{Int64}, regex::Regex, anshook::typeof(identity), softscope::Bool) at /home/pkgeval/.julia/packages/NBInclude/mNhzW/src/NBInclude.jl:82
[11] nbinclude(::Module, ::String) at /home/pkgeval/.julia/packages/NBInclude/mNhzW/src/NBInclude.jl:53
[12] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_docs.jl:4
[13] include(::String) at ./client.jl:444
[14] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:76
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[16] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:76
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[18] top-level scope at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:35
[19] include(::String) at ./client.jl:444
[20] top-level scope at none:6
[21] eval(::Module, ::Any) at ./boot.jl:331
[22] exec_options(::Base.JLOptions) at ./client.jl:260
[23] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/doc/BayesNets.ipynb:In[17]:2
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/test_docs.jl:3
Test Summary: | Pass Error Total
bn | 368 6 374
utils | 6 6
cpds | 78 78
tables | 1 1
factors | 41 41
bayesnets | 41 41
gibbs | 1 1
sampling | 6 1 7
inference | 101 101
learning | 1 1
io | 28 28
ndgrid | 8 8
discrete bayes | 27 1 28
gen bn | 32 32
docs | 1 1
ERROR: LoadError: Some tests did not pass: 368 passed, 0 failed, 6 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/BayesNets/XwVs4/test/runtests.jl:34
ERROR: Package BayesNets errored during testing
Stacktrace:
[1] pkgerror(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1561
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:327
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:314
[5] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope at none:16