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1.6.0-DEV-cbd854b0f4.log
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Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Mocking ────────────────────── v0.7.1
Installed SetRounding ────────────────── v0.2.0
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed LabelledArrays ─────────────── v1.2.1
Installed Intervals ──────────────────── v1.0.0
Installed LineSearches ───────────────── v7.0.1
Installed CausalityTools ─────────────── v0.9.9
Installed RecipesBase ────────────────── v0.7.0
Installed NearestNeighbors ───────────── v0.4.4
Installed OrderedCollections ─────────── v1.2.0
Installed SLEEFPirates ───────────────── v0.5.0
Installed DocStringExtensions ────────── v0.8.1
Installed CpuId ──────────────────────── v0.2.2
Installed Polynomials ────────────────── v0.8.0
Installed UnicodePlots ───────────────── v1.2.0
Installed PerronFrobenius ────────────── v0.6.0
Installed AxisAlgorithms ─────────────── v1.0.0
Installed Compat ─────────────────────── v2.2.0
Installed Ratios ─────────────────────── v0.4.0
Installed HypothesisTests ────────────── v0.8.0
Installed Bootstrap ──────────────────── v2.2.0
Installed StatsBase ──────────────────── v0.32.2
Installed ChaosTools ─────────────────── v1.10.1
Installed DataFrames ─────────────────── v0.21.2
Installed TimeZones ──────────────────── v1.0.1
Installed Reexport ───────────────────── v0.2.0
Installed PDMats ─────────────────────── v0.9.12
Installed CommonSubexpressions ───────── v0.2.0
Installed ArrayInterface ─────────────── v2.8.7
Installed Conda ──────────────────────── v1.4.1
Installed Wavelets ───────────────────── v0.8.0
Installed StateSpaceReconstruction ───── v0.4.2
Installed Zlib_jll ───────────────────── v1.2.11+10
Installed DataValueInterfaces ────────── v1.0.0
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed IterTools ──────────────────── v1.3.0
Installed PyCall ─────────────────────── v1.91.4
Installed FunctionWrappers ───────────── v1.1.1
Installed DiffRules ──────────────────── v1.0.1
Installed LoopVectorization ──────────── v0.8.3
Installed StaticArrays ───────────────── v0.11.1
Installed QuadGK ─────────────────────── v2.3.1
Installed AbstractFFTs ───────────────── v0.5.0
Installed InvertedIndices ────────────── v1.0.0
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed DocumenterTools ────────────── v0.1.5
Installed BinaryProvider ─────────────── v0.5.10
Installed MKL_jll ────────────────────── v2020.1.216+0
Installed LoggingExtras ──────────────── v0.4.1
Installed CRlibm ─────────────────────── v0.8.0
Installed DelayEmbeddings ────────────── v1.6.0
Installed SimpleDiffEq ───────────────── v1.1.0
Installed EzXML ──────────────────────── v1.1.0
Installed TableTraits ────────────────── v1.0.0
Installed RecurrenceAnalysis ─────────── v1.2.0
Installed XML2_jll ───────────────────── v2.9.9+4
Installed PooledArrays ───────────────── v0.5.3
Installed RecursiveArrayTools ────────── v2.4.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed ProgressLogging ────────────── v0.1.2
Installed VectorizationBase ──────────── v0.12.6
Installed CategoricalArrays ──────────── v0.8.1
Installed Optim ──────────────────────── v0.20.1
Installed LombScargle ────────────────── v0.5.1
Installed Measurements ───────────────── v2.2.1
Installed SIMDPirates ────────────────── v0.8.6
Installed PositiveFactorizations ─────── v0.2.3
Installed KernelDensity ──────────────── v0.5.1
Installed DataStructures ─────────────── v0.17.17
Installed IntervalArithmetic ─────────── v0.16.1
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed FiniteDiff ─────────────────── v2.3.2
Installed Documenter ─────────────────── v0.24.11
Installed MacroTools ─────────────────── v0.5.5
Installed DynamicalSystemsBase ───────── v1.5.3
Installed IterativeSolvers ───────────── v0.8.4
Installed Crayons ────────────────────── v4.0.2
Installed ChainRulesCore ─────────────── v0.8.0
Installed Calculus ───────────────────── v0.5.1
Installed Parameters ─────────────────── v0.12.1
Installed Rmath ──────────────────────── v0.6.1
Installed FFTW ───────────────────────── v1.2.2
Installed JSON ───────────────────────── v0.21.0
Installed VersionParsing ─────────────── v1.2.0
Installed LaTeXStrings ───────────────── v1.1.0
Installed TerminalLoggers ────────────── v0.1.1
Installed Distances ──────────────────── v0.8.2
Installed UnPack ─────────────────────── v0.1.0
Installed Roots ──────────────────────── v0.8.4
Installed NLSolversBase ──────────────── v7.6.1
Installed ErrorfreeArithmetic ────────── v0.5.0
Installed Unitful ────────────────────── v1.2.1
Installed DynamicalSystems ───────────── v1.3.0
Installed TransferEntropy ────────────── v0.5.6
Installed Libiconv_jll ───────────────── v1.16.0+2
Installed NaNMath ────────────────────── v0.3.3
Installed ZygoteRules ────────────────── v0.2.0
Installed MuladdMacro ────────────────── v0.2.2
Installed ForwardDiff ────────────────── v0.10.10
Installed Distributions ──────────────── v0.21.12
Installed InplaceOps ─────────────────── v0.3.0
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed ProgressMeter ──────────────── v1.3.0
Installed OpenBLAS_jll ───────────────── v0.3.9+4
Installed Tables ─────────────────────── v1.0.4
Installed Sass ───────────────────────── v0.1.0
Installed WoodburyMatrices ───────────── v0.5.2
Installed FillArrays ─────────────────── v0.8.10
Installed Parsers ────────────────────── v1.0.5
Installed StatsModels ────────────────── v0.6.11
Installed OffsetArrays ───────────────── v1.0.4
Installed TimeseriesSurrogates ───────── v0.5.1
Installed DSP ────────────────────────── v0.6.6
Installed UncertainData ──────────────── v0.10.3
Installed Requires ───────────────────── v1.0.1
Installed Arpack ─────────────────────── v0.4.0
Installed TreeViews ──────────────────── v0.3.0
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DataAPI ────────────────────── v1.3.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Combinatorics ──────────────── v0.7.0
Installed AbstractTrees ──────────────── v0.3.3
Installed DiffResults ────────────────── v1.0.2
Installed RecursiveFactorization ─────── v0.1.2
Installed ConstructionBase ───────────── v1.0.0
Installed Missings ───────────────────── v0.4.3
Installed FastRounding ───────────────── v0.3.1
Installed ShiftedArrays ──────────────── v1.0.0
Installed Simplices ──────────────────── v0.4.1
Installed CrossMappings ──────────────── v0.3.4
Installed IteratorInterfaceExtensions ── v1.0.0
Installed ExprTools ──────────────────── v0.1.1
Installed SpecialFunctions ───────────── v0.9.0
Installed StatsFuns ──────────────────── v0.9.5
Installed CausalityToolsBase ─────────── v0.7.2
Installed DiffEqBase ─────────────────── v6.36.3
Installed Interpolations ─────────────── v0.12.10
Updating `~/.julia/environments/v1.6/Project.toml`
[5520caf5] + CausalityTools v0.9.9
Updating `~/.julia/environments/v1.6/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[1520ce14] + AbstractTrees v0.3.3
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4fba245c] + ArrayInterface v2.8.7
[13072b0f] + AxisAlgorithms v1.0.0
[b99e7846] + BinaryProvider v0.5.10
[e28b5b4c] + Bootstrap v2.2.0
[96374032] + CRlibm v0.8.0
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.8.1
[5520caf5] + CausalityTools v0.9.9
[b1f25513] + CausalityToolsBase v0.7.2
[d360d2e6] + ChainRulesCore v0.8.0
[608a59af] + ChaosTools v1.10.1
[861a8166] + Combinatorics v0.7.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[88cd18e8] + ConsoleProgressMonitor v0.1.2
[187b0558] + ConstructionBase v1.0.0
[adafc99b] + CpuId v0.2.2
[a8cc5b0e] + Crayons v4.0.2
[7011085d] + CrossMappings v0.3.4
[717857b8] + DSP v0.6.6
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.2
[864edb3b] + DataStructures v0.17.17
[e2d170a0] + DataValueInterfaces v1.0.0
[5732040d] + DelayEmbeddings v1.6.0
[2b5f629d] + DiffEqBase v6.36.3
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.12
[ffbed154] + DocStringExtensions v0.8.1
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[35a29f4d] + DocumenterTools v0.1.5
[61744808] + DynamicalSystems v1.3.0
[6e36e845] + DynamicalSystemsBase v1.5.3
[90fa49ef] + ErrorfreeArithmetic v0.5.0
[e2ba6199] + ExprTools v0.1.1
[8f5d6c58] + EzXML v1.1.0
[7a1cc6ca] + FFTW v1.2.2
[f5851436] + FFTW_jll v3.3.9+5
[fa42c844] + FastRounding v0.3.1
[1a297f60] + FillArrays v0.8.10
[6a86dc24] + FiniteDiff v2.3.2
[f6369f11] + ForwardDiff v0.10.10
[069b7b12] + FunctionWrappers v1.1.1
[09f84164] + HypothesisTests v0.8.0
[505f98c9] + InplaceOps v0.3.0
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.10
[d1acc4aa] + IntervalArithmetic v0.16.1
[d8418881] + Intervals v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.4
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[b964fa9f] + LaTeXStrings v1.1.0
[2ee39098] + LabelledArrays v1.2.1
[1d6d02ad] + LeftChildRightSiblingTrees v0.1.2
[94ce4f54] + Libiconv_jll v1.16.0+2
[d3d80556] + LineSearches v7.0.1
[e6f89c97] + LoggingExtras v0.4.1
[fc60dff9] + LombScargle v0.5.1
[bdcacae8] + LoopVectorization v0.8.3
[856f044c] + MKL_jll v2020.1.216+0
[1914dd2f] + MacroTools v0.5.5
[eff96d63] + Measurements v2.2.1
[e1d29d7a] + Missings v0.4.3
[78c3b35d] + Mocking v0.7.1
[46d2c3a1] + MuladdMacro v0.2.2
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v1.0.4
[4536629a] + OpenBLAS_jll v0.3.9+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[429524aa] + Optim v0.20.1
[bac558e1] + OrderedCollections v1.2.0
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.5
[260eed61] + PerronFrobenius v0.6.0
[f27b6e38] + Polynomials v0.8.0
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[33c8b6b6] + ProgressLogging v0.1.2
[92933f4c] + ProgressMeter v1.3.0
[438e738f] + PyCall v1.91.4
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v0.7.0
[639c3291] + RecurrenceAnalysis v1.2.0
[731186ca] + RecursiveArrayTools v2.4.1
[f2c3362d] + RecursiveFactorization v0.1.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[f2b01f46] + Roots v0.8.4
[21efa798] + SIMDPirates v0.8.6
[476501e8] + SLEEFPirates v0.5.0
[322a6be2] + Sass v0.1.0
[3cc68bcd] + SetRounding v0.2.0
[1277b4bf] + ShiftedArrays v1.0.0
[05bca326] + SimpleDiffEq v1.1.0
[d5428e67] + Simplices v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[1441a9f6] + StateSpaceReconstruction v0.4.2
[90137ffa] + StaticArrays v0.11.1
[2913bbd2] + StatsBase v0.32.2
[4c63d2b9] + StatsFuns v0.9.5
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[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[5d786b92] + TerminalLoggers v0.1.1
[f269a46b] + TimeZones v1.0.1
[c804724b] + TimeseriesSurrogates v0.5.1
[ea221983] + TransferEntropy v0.5.6
[a2a6695c] + TreeViews v0.3.0
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[dcd9ba68] + UncertainData v0.10.3
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[1986cc42] + Unitful v1.2.1
[3d5dd08c] + VectorizationBase v0.12.6
[81def892] + VersionParsing v1.2.0
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[efce3f68] + WoodburyMatrices v0.5.2
[02c8fc9c] + XML2_jll v2.9.9+4
[83775a58] + Zlib_jll v1.2.11+10
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[7b1f6079] + FileWatching
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building VectorizationBase → `~/.julia/packages/VectorizationBase/SyqTC/deps/build.log`
Building SLEEFPirates ─────→ `~/.julia/packages/SLEEFPirates/mkNmA/deps/build.log`
Building TimeZones ────────→ `~/.julia/packages/TimeZones/zymSN/deps/build.log`
Building FFTW ─────────────→ `~/.julia/packages/FFTW/kcXL6/deps/build.log`
Building Conda ────────────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall ───────────→ `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Building CRlibm ───────────→ `~/.julia/packages/CRlibm/NFCH5/deps/build.log`
Building Sass ─────────────→ `~/.julia/packages/Sass/EZMlY/deps/build.log`
Building CausalityTools ───→ `~/.julia/packages/CausalityTools/bvmzv/deps/build.log`
Testing CausalityTools
Status `/tmp/jl_JBmpdl/Project.toml`
[5520caf5] CausalityTools v0.9.9
[b1f25513] CausalityToolsBase v0.7.2
[8f4d0f93] Conda v1.4.1
[7011085d] CrossMappings v0.3.4
[5732040d] DelayEmbeddings v1.6.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.12
[61744808] DynamicalSystems v1.3.0
[09f84164] HypothesisTests v0.8.0
[a98d9a8b] Interpolations v0.12.10
[b8a86587] NearestNeighbors v0.4.4
[260eed61] PerronFrobenius v0.6.0
[438e738f] PyCall v1.91.4
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[05bca326] SimpleDiffEq v1.1.0
[d5428e67] Simplices v0.4.1
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.11.1
[2913bbd2] StatsBase v0.32.2
[c804724b] TimeseriesSurrogates v0.5.1
[ea221983] TransferEntropy v0.5.6
[dcd9ba68] UncertainData v0.10.3
[44cfe95a] Pkg
[8dfed614] Test
Status `/tmp/jl_JBmpdl/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[1520ce14] AbstractTrees v0.3.3
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.8.7
[13072b0f] AxisAlgorithms v1.0.0
[b99e7846] BinaryProvider v0.5.10
[e28b5b4c] Bootstrap v2.2.0
[96374032] CRlibm v0.8.0
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.8.1
[5520caf5] CausalityTools v0.9.9
[b1f25513] CausalityToolsBase v0.7.2
[d360d2e6] ChainRulesCore v0.8.0
[608a59af] ChaosTools v1.10.1
[861a8166] Combinatorics v0.7.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.0.0
[adafc99b] CpuId v0.2.2
[a8cc5b0e] Crayons v4.0.2
[7011085d] CrossMappings v0.3.4
[717857b8] DSP v0.6.6
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.2
[864edb3b] DataStructures v0.17.17
[e2d170a0] DataValueInterfaces v1.0.0
[5732040d] DelayEmbeddings v1.6.0
[2b5f629d] DiffEqBase v6.36.3
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.12
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.11
[35a29f4d] DocumenterTools v0.1.5
[61744808] DynamicalSystems v1.3.0
[6e36e845] DynamicalSystemsBase v1.5.3
[90fa49ef] ErrorfreeArithmetic v0.5.0
[e2ba6199] ExprTools v0.1.1
[8f5d6c58] EzXML v1.1.0
[7a1cc6ca] FFTW v1.2.2
[f5851436] FFTW_jll v3.3.9+5
[fa42c844] FastRounding v0.3.1
[1a297f60] FillArrays v0.8.10
[6a86dc24] FiniteDiff v2.3.2
[f6369f11] ForwardDiff v0.10.10
[069b7b12] FunctionWrappers v1.1.1
[09f84164] HypothesisTests v0.8.0
[505f98c9] InplaceOps v0.3.0
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.10
[d1acc4aa] IntervalArithmetic v0.16.1
[d8418881] Intervals v1.0.0
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[b964fa9f] LaTeXStrings v1.1.0
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[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[94ce4f54] Libiconv_jll v1.16.0+2
[d3d80556] LineSearches v7.0.1
[e6f89c97] LoggingExtras v0.4.1
[fc60dff9] LombScargle v0.5.1
[bdcacae8] LoopVectorization v0.8.3
[856f044c] MKL_jll v2020.1.216+0
[1914dd2f] MacroTools v0.5.5
[eff96d63] Measurements v2.2.1
[e1d29d7a] Missings v0.4.3
[78c3b35d] Mocking v0.7.1
[46d2c3a1] MuladdMacro v0.2.2
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[6fe1bfb0] OffsetArrays v1.0.4
[4536629a] OpenBLAS_jll v0.3.9+4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[429524aa] Optim v0.20.1
[bac558e1] OrderedCollections v1.2.0
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.5
[260eed61] PerronFrobenius v0.6.0
[f27b6e38] Polynomials v0.8.0
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[33c8b6b6] ProgressLogging v0.1.2
[92933f4c] ProgressMeter v1.3.0
[438e738f] PyCall v1.91.4
[1fd47b50] QuadGK v2.3.1
[c84ed2f1] Ratios v0.4.0
[3cdcf5f2] RecipesBase v0.7.0
[639c3291] RecurrenceAnalysis v1.2.0
[731186ca] RecursiveArrayTools v2.4.1
[f2c3362d] RecursiveFactorization v0.1.2
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[f2b01f46] Roots v0.8.4
[21efa798] SIMDPirates v0.8.6
[476501e8] SLEEFPirates v0.5.0
[322a6be2] Sass v0.1.0
[3cc68bcd] SetRounding v0.2.0
[1277b4bf] ShiftedArrays v1.0.0
[05bca326] SimpleDiffEq v1.1.0
[d5428e67] Simplices v0.4.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.11.1
[2913bbd2] StatsBase v0.32.2
[4c63d2b9] StatsFuns v0.9.5
[3eaba693] StatsModels v0.6.11
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[5d786b92] TerminalLoggers v0.1.1
[f269a46b] TimeZones v1.0.1
[c804724b] TimeseriesSurrogates v0.5.1
[ea221983] TransferEntropy v0.5.6
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v0.1.0
[dcd9ba68] UncertainData v0.10.3
[b8865327] UnicodePlots v1.2.0
[1986cc42] Unitful v1.2.1
[3d5dd08c] VectorizationBase v0.12.6
[81def892] VersionParsing v1.2.0
[29a6e085] Wavelets v0.8.0
[efce3f68] WoodburyMatrices v0.5.2
[02c8fc9c] XML2_jll v2.9.9+4
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[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[7b1f6079] FileWatching
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
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[2f01184e] SparseArrays
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[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.4.1 | py37h0b6359f_0 14.5 MB
------------------------------------------------------------
Total: 14.5 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.4.1-py37h0b6359f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Update message: DynamicalSystems v1.3
A method that estimates the predictability properties of a
dynamical system has been implemented, following the work of:
Wernecke, H., Sándor, B. & Gros, C.
*How to test for partially predictable chaos*.
See the function `predictability`.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: using DelayEmbeddings.AbstractEmbedding in module PerronFrobenius conflicts with an existing identifier.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Update message: UncertainData v0.8.0
----------------
New features
----------------
- Added binned resampling methods that uses `BinnedResampling` and
`BinnedMeanResampling` schemes.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Update message: CausalityTools v0.9.0
----------------
New functionality
----------------
#### TransferEntropy.jl
- Added [`NearestNeighbourMI`](@ref) transfer entropy estimator.
- Added [`transferentropy(::Any, ::TEVars, ::NearestNeighbourMI)`](@ref) method.
- Transfer entropy estimators now contain a field `b` which gives the base of the logarithm
used during transfer entropy computations, and hence dictates the unit of the transfer
entropy. By default, `b = 2`, which gives the transfer entropy in bits. The keyword `b`
is thus obsolete in all transfer entropy methods that used it before.
#### CausalityTools.jl
- Added [`NearestNeighbourMITest`](@ref) transfer entropy test.
- Added [`NormalisedPredictiveAsymmetryTest`](@ref), for which the predictive asymmetry
is normalised to some fraction of the mean of the raw values of the predictive statistic.
- All subtypes of `CausalityTest` are now mutable. This allows adjusting test
parameters during sensitivity analyses without creating a new test every time.
#### TimeseriesSurrogates.jl
- Plotting functionality is behind a Requires-block. To use the plotting functionality, you
now need to do `using Plots` beforehand.
### Documentation
- Fixed small error in documentation for `DiscreteSystemSetup`.
- Created high-level pages for transfer entropy. Re-did documentation.
- Created high-level pages for cross mappings.
Test Summary: | Pass Total
Discrete example systems | 26 26
Test Summary: | Pass Total
Continuous example systems | 18 18
Test Summary: | Pass Total
High level wrappers | 11 11
Test Summary: | Pass Total
Causality tests on scalar time series | 37 37
Test Summary: | Pass Total
DynamicalSystems.jl integration | 12 12
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
Test Summary: | Pass Total
UncertainData.jl integration | 237 237
Testing CausalityTools tests passed