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1.6.0-DEV-cbd854b0f4.log
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Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Zstd_jll ─────────── v1.4.5+0
Installed YAML ─────────────── v0.3.2
Installed LegacyStrings ────── v0.4.1
Installed BufferedStreams ──── v1.0.0
Installed DistributedArrays ── v0.6.5
Installed ClimateTasks ─────── v0.1.1
Installed Contour ──────────── v0.5.3
Installed NetCDF ───────────── v0.10.2
Installed libfdk_aac_jll ───── v0.1.6+2
Installed RecipesBase ──────── v0.8.0
Installed NearestNeighbors ─── v0.4.5
Installed Lz4_jll ──────────── v1.9.2+0
Installed LibVPX_jll ───────── v1.8.1+1
Installed FreeType2_jll ────── v2.10.1+2
Installed OrderedCollections ─ v1.2.0
Installed DiskArrays ───────── v0.2.3
Installed Ogg_jll ──────────── v1.3.4+0
Installed x264_jll ─────────── v2019.5.25+2
Installed Compat ───────────── v2.2.0
Installed TranscodingStreams ─ v0.9.5
Installed BinDeps ──────────── v1.0.1
Installed HDF5 ─────────────── v0.12.5
Installed FileIO ───────────── v1.3.0
Installed Blosc_jll ────────── v1.14.3+1
Installed Reexport ─────────── v0.2.0
Installed URIParser ────────── v0.4.1
Installed MAT ──────────────── v0.7.0
Installed StatsBase ────────── v0.33.0
Installed Zlib_jll ─────────── v1.2.11+10
Installed Conda ────────────── v1.4.1
Installed FFMPEG_jll ───────── v4.1.0+3
Installed Codecs ───────────── v0.5.0
Installed Showoff ──────────── v0.3.1
Installed CodecZlib ────────── v0.6.0
Installed Primes ───────────── v0.4.0
Installed x265_jll ─────────── v3.0.0+1
Installed FixedPointNumbers ── v0.8.0
Installed FFMPEG ───────────── v0.3.0
Installed CatViews ─────────── v1.0.0
Installed Opus_jll ─────────── v1.3.1+1
Installed Plots ────────────── v0.29.9
Installed BinaryProvider ───── v0.5.10
Installed StaticArrays ─────── v0.12.3
Installed LAME_jll ─────────── v3.100.0+1
Installed CondaBinDeps ─────── v0.2.0
Installed libvorbis_jll ────── v1.3.6+4
Installed FortranFiles ─────── v0.5.0
Installed Bzip2_jll ────────── v1.0.6+2
Installed SortingAlgorithms ── v0.3.1
Installed CMake ────────────── v1.2.0
Installed DataStructures ───── v0.17.17
Installed GeometryTypes ────── v0.8.3
Installed CMakeWrapper ─────── v0.2.4
Installed FriBidi_jll ──────── v1.0.5+3
Installed JLD ──────────────── v0.9.2
Installed Parameters ───────── v0.12.1
Installed JSON ─────────────── v0.21.0
Installed VersionParsing ───── v1.2.0
Installed Distances ────────── v0.9.0
Installed UnPack ───────────── v1.0.1
Installed ColorTypes ───────── v0.10.3
Installed PlotThemes ───────── v1.0.3
Installed Formatting ───────── v0.4.1
Installed NaNMath ──────────── v0.3.3
Installed Unitful ──────────── v1.2.1
Installed Blosc ────────────── v0.7.0
Installed Requires ─────────── v1.0.1
Installed Parsers ──────────── v1.0.5
Installed Colors ───────────── v0.12.1
Installed OpenSSL_jll ──────── v1.1.1+2
Installed DataAPI ──────────── v1.3.0
Installed ConstructionBase ─── v1.0.0
Installed PlotUtils ────────── v0.6.5
Installed MITgcmTools ──────── v0.1.3
Installed Missings ─────────── v0.4.3
Installed libass_jll ───────── v0.14.0+2
Installed Measures ─────────── v0.3.1
Installed GR ───────────────── v0.48.0
Installed MeshArrays ───────── v0.2.10
Updating `~/.julia/environments/v1.6/Project.toml`
[1a49d507] + ClimateTasks v0.1.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[9e28174c] + BinDeps v1.0.1
[b99e7846] + BinaryProvider v0.5.10
[a74b3585] + Blosc v0.7.0
[0b7ba130] + Blosc_jll v1.14.3+1
[e1450e63] + BufferedStreams v1.0.0
[6e34b625] + Bzip2_jll v1.0.6+2
[631607c0] + CMake v1.2.0
[d5fb7624] + CMakeWrapper v0.2.4
[81a5f4ea] + CatViews v1.0.0
[1a49d507] + ClimateTasks v0.1.1
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.10.3
[5ae59095] + Colors v0.12.1
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.4.1
[a9693cdc] + CondaBinDeps v0.2.0
[187b0558] + ConstructionBase v1.0.0
[d38c429a] + Contour v0.5.3
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.17
[3c3547ce] + DiskArrays v0.2.3
[b4f34e82] + Distances v0.9.0
[aaf54ef3] + DistributedArrays v0.6.5
[c87230d0] + FFMPEG v0.3.0
[b22a6f82] + FFMPEG_jll v4.1.0+3
[5789e2e9] + FileIO v1.3.0
[53c48c17] + FixedPointNumbers v0.8.0
[59287772] + Formatting v0.4.1
[c58ffaec] + FortranFiles v0.5.0
[d7e528f0] + FreeType2_jll v2.10.1+2
[559328eb] + FriBidi_jll v1.0.5+3
[28b8d3ca] + GR v0.48.0
[4d00f742] + GeometryTypes v0.8.3
[f67ccb44] + HDF5 v0.12.5
[4138dd39] + JLD v0.9.2
[682c06a0] + JSON v0.21.0
[c1c5ebd0] + LAME_jll v3.100.0+1
[1b4a561d] + LegacyStrings v0.4.1
[dd192d2f] + LibVPX_jll v1.8.1+1
[5ced341a] + Lz4_jll v1.9.2+0
[23992714] + MAT v0.7.0
[62725fbc] + MITgcmTools v0.1.3
[442fdcdd] + Measures v0.3.1
[cb8c808f] + MeshArrays v0.2.10
[e1d29d7a] + Missings v0.4.3
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.5
[30363a11] + NetCDF v0.10.2
[e7412a2a] + Ogg_jll v1.3.4+0
[458c3c95] + OpenSSL_jll v1.1.1+2
[91d4177d] + Opus_jll v1.3.1+1
[bac558e1] + OrderedCollections v1.2.0
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.5
[ccf2f8ad] + PlotThemes v1.0.3
[995b91a9] + PlotUtils v0.6.5
[91a5bcdd] + Plots v0.29.9
[27ebfcd6] + Primes v0.4.0
[3cdcf5f2] + RecipesBase v0.8.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.3
[2913bbd2] + StatsBase v0.33.0
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.1
[3a884ed6] + UnPack v1.0.1
[1986cc42] + Unitful v1.2.1
[81def892] + VersionParsing v1.2.0
[ddb6d928] + YAML v0.3.2
[83775a58] + Zlib_jll v1.2.11+10
[3161d3a3] + Zstd_jll v1.4.5+0
[0ac62f75] + libass_jll v0.14.0+2
[f638f0a6] + libfdk_aac_jll v0.1.6+2
[f27f6e37] + libvorbis_jll v1.3.6+4
[1270edf5] + x264_jll v2019.5.25+2
[dfaa095f] + x265_jll v3.0.0+1
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building NetCDF ───→ `~/.julia/packages/NetCDF/RrTZz/deps/build.log`
Building CMake ────→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building HDF5 ─────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building GR ───────→ `~/.julia/packages/GR/yMV3y/deps/build.log`
Building Plots ────→ `~/.julia/packages/Plots/cc8wh/deps/build.log`
Testing ClimateTasks
Status `/tmp/jl_onduFA/Project.toml`
[1a49d507] ClimateTasks v0.1.1
[8dfed614] Test
Status `/tmp/jl_onduFA/Manifest.toml`
[9e28174c] BinDeps v1.0.1
[b99e7846] BinaryProvider v0.5.10
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[e1450e63] BufferedStreams v1.0.0
[6e34b625] Bzip2_jll v1.0.6+2
[631607c0] CMake v1.2.0
[d5fb7624] CMakeWrapper v0.2.4
[81a5f4ea] CatViews v1.0.0
[1a49d507] ClimateTasks v0.1.1
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.10.3
[5ae59095] Colors v0.12.1
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.4.1
[a9693cdc] CondaBinDeps v0.2.0
[187b0558] ConstructionBase v1.0.0
[d38c429a] Contour v0.5.3
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.17.17
[3c3547ce] DiskArrays v0.2.3
[b4f34e82] Distances v0.9.0
[aaf54ef3] DistributedArrays v0.6.5
[c87230d0] FFMPEG v0.3.0
[b22a6f82] FFMPEG_jll v4.1.0+3
[5789e2e9] FileIO v1.3.0
[53c48c17] FixedPointNumbers v0.8.0
[59287772] Formatting v0.4.1
[c58ffaec] FortranFiles v0.5.0
[d7e528f0] FreeType2_jll v2.10.1+2
[559328eb] FriBidi_jll v1.0.5+3
[28b8d3ca] GR v0.48.0
[4d00f742] GeometryTypes v0.8.3
[f67ccb44] HDF5 v0.12.5
[4138dd39] JLD v0.9.2
[682c06a0] JSON v0.21.0
[c1c5ebd0] LAME_jll v3.100.0+1
[1b4a561d] LegacyStrings v0.4.1
[dd192d2f] LibVPX_jll v1.8.1+1
[5ced341a] Lz4_jll v1.9.2+0
[23992714] MAT v0.7.0
[62725fbc] MITgcmTools v0.1.3
[442fdcdd] Measures v0.3.1
[cb8c808f] MeshArrays v0.2.10
[e1d29d7a] Missings v0.4.3
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.5
[30363a11] NetCDF v0.10.2
[e7412a2a] Ogg_jll v1.3.4+0
[458c3c95] OpenSSL_jll v1.1.1+2
[91d4177d] Opus_jll v1.3.1+1
[bac558e1] OrderedCollections v1.2.0
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.5
[ccf2f8ad] PlotThemes v1.0.3
[995b91a9] PlotUtils v0.6.5
[91a5bcdd] Plots v0.29.9
[27ebfcd6] Primes v0.4.0
[3cdcf5f2] RecipesBase v0.8.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[90137ffa] StaticArrays v0.12.3
[2913bbd2] StatsBase v0.33.0
[3bb67fe8] TranscodingStreams v0.9.5
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v1.0.1
[1986cc42] Unitful v1.2.1
[81def892] VersionParsing v1.2.0
[ddb6d928] YAML v0.3.2
[83775a58] Zlib_jll v1.2.11+10
[3161d3a3] Zstd_jll v1.4.5+0
[0ac62f75] libass_jll v0.14.0+2
[f638f0a6] libfdk_aac_jll v0.1.6+2
[f27f6e37] libvorbis_jll v1.3.6+4
[1270edf5] x264_jll v2019.5.25+2
[dfaa095f] x265_jll v3.0.0+1
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Cloning into 'MITgcm'...
Checking out files: 58% (3690/6336) Checking out files: 59% (3739/6336) Checking out files: 60% (3802/6336) Checking out files: 61% (3865/6336) Checking out files: 62% (3929/6336) Checking out files: 63% (3992/6336) Checking out files: 64% (4056/6336) Checking out files: 65% (4119/6336) Checking out files: 66% (4182/6336) Checking out files: 67% (4246/6336) Checking out files: 68% (4309/6336) Checking out files: 69% (4372/6336) Checking out files: 70% (4436/6336) Checking out files: 71% (4499/6336) Checking out files: 71% (4506/6336) Checking out files: 72% (4562/6336) Checking out files: 73% (4626/6336) Checking out files: 74% (4689/6336) Checking out files: 75% (4752/6336) Checking out files: 76% (4816/6336) Checking out files: 77% (4879/6336) Checking out files: 78% (4943/6336) Checking out files: 79% (5006/6336) Checking out files: 80% (5069/6336) Checking out files: 81% (5133/6336) Checking out files: 82% (5196/6336) Checking out files: 83% (5259/6336) Checking out files: 84% (5323/6336) Checking out files: 85% (5386/6336) Checking out files: 86% (5449/6336) Checking out files: 87% (5513/6336) Checking out files: 88% (5576/6336) Checking out files: 89% (5640/6336) Checking out files: 90% (5703/6336) Checking out files: 91% (5766/6336) Checking out files: 92% (5830/6336) Checking out files: 92% (5865/6336) Checking out files: 93% (5893/6336) Checking out files: 94% (5956/6336) Checking out files: 95% (6020/6336) Checking out files: 96% (6083/6336) Checking out files: 97% (6146/6336) Checking out files: 98% (6210/6336) Checking out files: 99% (6273/6336) Checking out files: 100% (6336/6336) Checking out files: 100% (6336/6336), done.
parsing options... OK (COMMAND='./mitgcmuv > output.txt')
creating the comparison code (using CC=cc)... OK
skipping mpack build
default 10 ----T----- ----S----- ----U----- ----V----- --PTR 01-- --PTR 02-- --PTR 03-- --PTR 04-- --PTR 05--
G D M c m s m s m s m s m s m s m s m s m s
e p a R g m m e . m m e . m m e . m m e . m m e . m m e . m m e . m m e . m m e .
n n k u 2 i a a d i a a d i a a d i a a d i a a d i a a d i a a d i a a d i a a d
2 d e n d n x n . n x n . n x n . n x n . n x n . n x n . n x n . n x n . n x n .
-------------------------------------------------------------------------------
Experiment: hs94.cs-32x32x5 ; extra_runs= impIGW
genmake ... successful
clean build-dir: make Clean ... successful
make depend ... successful
make ... successful
clean run-dir ... successful
linkdata from dirs: input
ldir=input: data data.diagnostics data.mnc data.pkg data.shap eedata eedata.mth prepare_run ; link files: tile001.mitgrid tile002.mitgrid tile003.mitgrid tile004.mitgrid tile005.mitgrid tile006.mitgrid from dir: ../../aim.5l_cs/input
runmodel in hs94.cs-32x32x5/run ... successful
=> output from running in hs94.cs-32x32x5/run :
> link mitgcmuv from dir ../build
> STOP NORMAL END
> S/R SHAP_FILT_READPARMS: WARNING <<< applying Filter after SOLVE_FOR_P (shap_filt_uvStar=FALSE)
> S/R SHAP_FILT_READPARMS: WARNING <<< requires to recompute Eta after ==> turn on exactConserv
> ** WARNING ** PACKAGES_CHECK: useMNC is TRUE
> ** WARNING ** but pkg/mnc has not been compiled (#undef ALLOW_MNC)
There were 14 decimal places of similarity for "Press. Solver (cg2d)"
There were 16 decimal places of similarity for "Theta minimum"
There were 16 decimal places of similarity for "Theta maximum"
There were 16 decimal places of similarity for "Theta mean"
There were 16 decimal places of similarity for "Theta Std.Dev"
There were 22 decimal places of similarity for "Salt minimum"
There were 22 decimal places of similarity for "Salt maximum"
There were 22 decimal places of similarity for "Salt mean"
There were 22 decimal places of similarity for "Salt Std.Dev"
There were 16 decimal places of similarity for "U minimum"
There were 16 decimal places of similarity for "U maximum"
There were 16 decimal places of similarity for "U mean"
There were 16 decimal places of similarity for "U Std.Dev"
There were 13 decimal places of similarity for "V minimum"
There were 13 decimal places of similarity for "V maximum"
There were 16 decimal places of similarity for "V mean"
There were 16 decimal places of similarity for "V Std.Dev"
clean run-dir ... successful
linkdata from dirs: input.impIGW input
ldir=input.impIGW: data data.diagnostics data.pkg data.shap eedata.mth pickup.0000025920 pickup.0000025920.meta pickup_nh.0000025920 prepare_run ; link files: dxC1_dXYa.face001.bin dxC1_dXYa.face002.bin dxC1_dXYa.face003.bin dxC1_dXYa.face004.bin dxC1_dXYa.face005.bin dxC1_dXYa.face006.bin from dir: ../../fizhi-cs-32x32x40/input
ldir=input: data.mnc eedata ; link files: tile001.mitgrid tile002.mitgrid tile003.mitgrid tile004.mitgrid tile005.mitgrid tile006.mitgrid from dir: ../../aim.5l_cs/input
runmodel in hs94.cs-32x32x5/tr_run.impIGW ... successful
=> output from running in hs94.cs-32x32x5/tr_run.impIGW :
> link mitgcmuv from dir ../build
> STOP NORMAL END
> WARNING >> READ_PICKUP: no field-list found
> WARNING >> try to read pickup as it used to be written
> WARNING >> until checkpoint59i (2007 Oct 22)
There were 16 decimal places of similarity for "Press. Solver (cg2d)"
There were 16 decimal places of similarity for "Theta minimum"
There were 16 decimal places of similarity for "Theta maximum"
There were 16 decimal places of similarity for "Theta mean"
There were 16 decimal places of similarity for "Theta Std.Dev"
There were 22 decimal places of similarity for "Salt minimum"
There were 22 decimal places of similarity for "Salt maximum"
There were 22 decimal places of similarity for "Salt mean"
There were 22 decimal places of similarity for "Salt Std.Dev"
There were 16 decimal places of similarity for "U minimum"
There were 16 decimal places of similarity for "U maximum"
There were 16 decimal places of similarity for "U mean"
There were 16 decimal places of similarity for "U Std.Dev"
There were 16 decimal places of similarity for "V minimum"
There were 16 decimal places of similarity for "V maximum"
There were 16 decimal places of similarity for "V mean"
There were 16 decimal places of similarity for "V Std.Dev"
-------------------------------------------------------------------------------
No results email was sent.
Sun Jun 7 05:35:50 UTC 2020
run: ./testreport -t hs94.cs-32x32x5
on : Linux 016406f6bf4f 4.15.0-101-generic #102-Ubuntu SMP Mon May 11 10:07:26 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
No "OPTFILE" was specified ; genmake2 found and uses:
OPTFILE=../../../tools/build_options/linux_amd64_gfortran
default 10 ----T----- ----S----- ----U----- ----V----- --PTR 01-- --PTR 02-- --PTR 03-- --PTR 04-- --PTR 05--
G D M c m s m s m s m s m s m s m s m s m s
e p a R g m m e . m m e . m m e . m m e . m m e . m m e . m m e . m m e . m m e .
n n k u 2 i a a d i a a d i a a d i a a d i a a d i a a d i a a d i a a d i a a d
2 d e n d n x n . n x n . n x n . n x n . n x n . n x n . n x n . n x n . n x n .
Y Y Y Y>14<16 16 16 16 22 22 22 22 16 16 16 16 13 13 16 16 . . . . . . . . pass hs94.cs-32x32x5
Y Y Y Y>16<16 16 16 16 22 22 22 22 16 16 16 16 16 16 16 16 . . . . . . . . pass hs94.cs-32x32x5.impIGW
Start time: Sun Jun 7 05:35:50 UTC 2020
End time: Sun Jun 7 05:39:34 UTC 2020
======== End of testreport execution ========
Test Summary: |
ClimateTasks.jl | No tests
Testing ClimateTasks tests passed