-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-d825de85f8.log
310 lines (305 loc) · 13.9 KB
/
1.6.0-DEV-d825de85f8.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
Julia Version 1.6.0-DEV.180
Commit d825de85f8 (2020-06-05 17:56 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Reexport ───────────────────── v0.2.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed Missings ───────────────────── v0.4.3
Installed DataValueInterfaces ────────── v1.0.0
Installed StatsFuns ──────────────────── v0.9.5
Installed FillArrays ─────────────────── v0.8.10
Installed ClinicalTrialUtilities ─────── v0.2.7
Installed StatsBase ──────────────────── v0.33.0
Installed Rmath ──────────────────────── v0.6.1
Installed Parsers ────────────────────── v1.0.5
Installed RecipesBase ────────────────── v1.0.1
Installed JSON ───────────────────────── v0.21.0
Installed OrderedCollections ─────────── v1.2.0
Installed DataAPI ────────────────────── v1.3.0
Installed PooledArrays ───────────────── v0.5.3
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed SpecialFunctions ───────────── v0.10.3
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed OpenBLAS_jll ───────────────── v0.3.9+4
Installed WeakRefStrings ─────────────── v0.6.2
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed PDMats ─────────────────────── v0.9.12
Installed Roots ──────────────────────── v1.0.1
Installed Tables ─────────────────────── v1.0.4
Installed DataStructures ─────────────── v0.17.17
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed FilePathsBase ──────────────── v0.7.0
Installed InvertedIndices ────────────── v1.0.0
Installed TableTraits ────────────────── v1.0.0
Installed Compat ─────────────────────── v3.10.0
Installed QuadGK ─────────────────────── v2.3.1
Installed CategoricalArrays ──────────── v0.7.7
Installed Arpack ─────────────────────── v0.4.0
Installed Distributions ──────────────── v0.23.4
Installed DataFrames ─────────────────── v0.20.2
Installed CSV ────────────────────────── v0.6.1
Updating `~/.julia/environments/v1.6/Project.toml`
[535c2557] + ClinicalTrialUtilities v0.2.7
Updating `~/.julia/environments/v1.6/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[336ed68f] + CSV v0.6.1
[324d7699] + CategoricalArrays v0.7.7
[535c2557] + ClinicalTrialUtilities v0.2.7
[34da2185] + Compat v3.10.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.17
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.4
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.10
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.9+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.2.0
[90014a1f] + PDMats v0.9.12
[69de0a69] + Parsers v1.0.5
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v1.0.1
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[f2b01f46] + Roots v1.0.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing ClinicalTrialUtilities
Status `/tmp/jl_FHDGKe/Project.toml`
[336ed68f] CSV v0.6.1
[535c2557] ClinicalTrialUtilities v0.2.7
[a93c6f00] DataFrames v0.20.2
[31c24e10] Distributions v0.23.4
[91a5bcdd] Plots v1.3.7
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v1.0.1
[189a3867] Reexport v0.2.0
[f2b01f46] Roots v1.0.1
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.0
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_FHDGKe/Manifest.toml`
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[6e34b625] Bzip2_jll v1.0.6+2
[336ed68f] CSV v0.6.1
[324d7699] CategoricalArrays v0.7.7
[535c2557] ClinicalTrialUtilities v0.2.7
[35d6a980] ColorSchemes v3.9.0
[3da002f7] ColorTypes v0.10.3
[5ae59095] Colors v0.12.1
[34da2185] Compat v3.10.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[d38c429a] Contour v0.5.3
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.17
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.4
[c87230d0] FFMPEG v0.3.0
[b22a6f82] FFMPEG_jll v4.1.0+3
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.10
[53c48c17] FixedPointNumbers v0.8.0
[d7e528f0] FreeType2_jll v2.10.1+2
[559328eb] FriBidi_jll v1.0.5+3
[28b8d3ca] GR v0.50.1
[4d00f742] GeometryTypes v0.8.3
[cd3eb016] HTTP v0.8.15
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[c1c5ebd0] LAME_jll v3.100.0+1
[dd192d2f] LibVPX_jll v1.8.1+1
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.0+2
[442fdcdd] Measures v0.3.1
[e1d29d7a] Missings v0.4.3
[77ba4419] NaNMath v0.3.3
[e7412a2a] Ogg_jll v1.3.4+0
[4536629a] OpenBLAS_jll v0.3.9+4
[458c3c95] OpenSSL_jll v1.1.1+2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[91d4177d] Opus_jll v1.3.1+1
[bac558e1] OrderedCollections v1.2.0
[90014a1f] PDMats v0.9.12
[69de0a69] Parsers v1.0.5
[ccf2f8ad] PlotThemes v2.0.0
[995b91a9] PlotUtils v1.0.4
[91a5bcdd] Plots v1.3.7
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v1.0.1
[01d81517] RecipesPipeline v0.1.10
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[f2b01f46] Roots v1.0.1
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.3
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[ea10d353] WeakRefStrings v0.6.2
[83775a58] Zlib_jll v1.2.11+10
[0ac62f75] libass_jll v0.14.0+2
[f638f0a6] libfdk_aac_jll v0.1.6+2
[f27f6e37] libvorbis_jll v1.3.6+4
[1270edf5] x264_jll v2019.5.25+2
[dfaa095f] x265_jll v3.0.0+1
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Package name: ClinicalTrialUtilities
Clinical Trial Power and Sample Size Utilities
Copyright © 2019 Vladimir Arnautov aka PharmCat (mail@pharmcat.net)
For references, citations and copyrights run: ClinicalTrialUtilities.citation()
Licence: ClinicalTrialUtilities.licence()
Test Summary: |
Info: | No tests
----------------------------------
--------- START TEST ---------
----------------------------------
----------------------------------
Test Summary: | Pass Total
Internal functions test | 46 46
----------------------------------
Test Summary: | Pass Total
#1 ctsamplen Test | 21 21
----------------------------------
Test Summary: | Pass Total
#2 ctpower Test | 17 17
----------------------------------
Test Summary: | Pass Total
#3 besamplen Test | 18 18
----------------------------------
Test Summary: | Pass Total
#4 bepower Test | 26 26
----------------------------------
Test Summary: | Pass Total
#5 Utilities | 19 19
----------------------------------
Test Summary: | Pass Total
#6 CI Test | 156 156
----------------------------------
#7 Descriptives : Error During Test at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/dstest.jl:2
Got exception outside of a @test
BoundsError: attempt to access 1-element Array{Real,1} at index [0]
Stacktrace:
[1] getindex at ./array.jl:811 [inlined]
[2] #_quantile#53 at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Statistics/src/Statistics.jl:977 [inlined]
[3] #quantile!#52 at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Statistics/src/Statistics.jl:943 [inlined]
[4] #quantile#55 at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Statistics/src/Statistics.jl:1044 [inlined]
[5] quantile at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Statistics/src/Statistics.jl:1044 [inlined]
[6] percentile at /home/pkgeval/.julia/packages/StatsBase/unDUx/src/scalarstats.jl:173 [inlined]
[7] descriptive_(::Array{Real,1}, ::NTuple{7,Symbol}) at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/src/descriptives.jl:385
[8] descriptive(::DataFrame; sort::Array{Symbol,1}, vars::Array{Symbol,1}, stats::Symbol) at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/src/descriptives.jl:176
[9] top-level scope at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/dstest.jl:43
[10] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[11] top-level scope at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/dstest.jl:3
[12] include(::String) at ./client.jl:444
[13] top-level scope at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/test.jl:219
[14] include(::String) at ./client.jl:444
[15] top-level scope at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/runtests.jl:6
[16] include(::String) at ./client.jl:444
[17] top-level scope at none:6
[18] eval(::Module, ::Any) at ./boot.jl:331
[19] exec_options(::Base.JLOptions) at ./client.jl:260
[20] _start() at ./client.jl:485
Test Summary: | Pass Error Total
#7 Descriptives | 29 1 30
ERROR: LoadError: LoadError: LoadError: Some tests did not pass: 29 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/dstest.jl:2
in expression starting at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/test.jl:219
in expression starting at /home/pkgeval/.julia/packages/ClinicalTrialUtilities/mzzCg/test/runtests.jl:6
ERROR: Package ClinicalTrialUtilities errored during testing
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1557
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:327
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:314
[5] #test#61 at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope at none:16