-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-cbd854b0f4.log
256 lines (241 loc) · 11.1 KB
/
1.6.0-DEV-cbd854b0f4.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Zlib_jll ─────────── v1.2.11+10
Installed CodecZlib ────────── v0.7.0
Installed JLD2 ─────────────── v0.1.13
Installed WriteVTK ─────────── v1.6.0
Installed OrderedCollections ─ v1.2.0
Installed FileIO ───────────── v1.3.0
Installed DataStructures ───── v0.17.17
Installed Granular ─────────── v0.4.3
Installed TranscodingStreams ─ v0.9.5
Installed Libiconv_jll ─────── v1.16.0+2
Installed LightXML ─────────── v0.9.0
Installed XML2_jll ─────────── v2.9.9+4
Updating `~/.julia/environments/v1.6/Project.toml`
[f5c4805d] + Granular v0.4.3
Updating `~/.julia/environments/v1.6/Manifest.toml`
[944b1d66] + CodecZlib v0.7.0
[864edb3b] + DataStructures v0.17.17
[5789e2e9] + FileIO v1.3.0
[f5c4805d] + Granular v0.4.3
[033835bb] + JLD2 v0.1.13
[94ce4f54] + Libiconv_jll v1.16.0+2
[9c8b4983] + LightXML v0.9.0
[bac558e1] + OrderedCollections v1.2.0
[3bb67fe8] + TranscodingStreams v0.9.5
[64499a7a] + WriteVTK v1.6.0
[02c8fc9c] + XML2_jll v2.9.9+4
[83775a58] + Zlib_jll v1.2.11+10
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing Granular
Status `/tmp/jl_AAG50W/Project.toml`
[f5c4805d] Granular v0.4.3
[033835bb] JLD2 v0.1.13
[64499a7a] WriteVTK v1.6.0
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[37e2e46d] LinearAlgebra
[44cfe95a] Pkg
[de0858da] Printf
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_AAG50W/Manifest.toml`
[944b1d66] CodecZlib v0.7.0
[864edb3b] DataStructures v0.17.17
[5789e2e9] FileIO v1.3.0
[f5c4805d] Granular v0.4.3
[033835bb] JLD2 v0.1.13
[94ce4f54] Libiconv_jll v1.16.0+2
[9c8b4983] LightXML v0.9.0
[bac558e1] OrderedCollections v1.2.0
[3bb67fe8] TranscodingStreams v0.9.5
[64499a7a] WriteVTK v1.6.0
[02c8fc9c] XML2_jll v2.9.9+4
[83775a58] Zlib_jll v1.2.11+10
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Pkg.jl:560
┌ Warning: Package NetCDF not found. Ocean/atmosphere grid read not supported. If required, install NetCDF and its requirements with `Pkg.add("NetCDF")`.
└ @ Granular ~/.julia/packages/Granular/5nDVL/src/ocean.jl:19
Info: #### compressive_failure.jl ####
[ Info: Testing compressive failure: uniaxial compression
[ Info: Testing compressive failure: shear
[ Info: Testing robustness of overlap calculations
Info: #### cohesion.jl ####
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: # Check contact age scheme
[ Info: # Check if bonds add tensile strength
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: Time step length t=0.008478741928617433 s
[ Info: # Add shear strength and test bending resistance (one grain rotating)
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: Time step length t=0.008478741928617433 s
[ Info: # Add shear strength and test bending resistance (one grain rotating)
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: Time step length t=0.008478741928617433 s
[ Info: # Add shear strength and test bending resistance (both grains rotating)
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: Time step length t=0.008478741928617433 s
[ Info: # Break bond through bending I
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: Time step length t=0.008478741928617433 s
[ Info: # Break bond through bending II
[ Info: Added grain 1
[ Info: Added grain 2
[ Info: Time step length t=0.008478741928617433 s
Info: #### grain.jl ####
[ Info: Writing simple simulation to VTK file
density: 934.0 kg/m^3
thickness: 1.0 m
contact_radius: 10.0 m
areal_radius: 10.0 m
circumreference: 62.83185307179586 m
horizontal_surface_area: 314.1592653589793 m^2
side_surface_area: 62.83185307179586 m^2
volume: 314.1592653589793 m^3
mass: 293424.7538452867 kg
moment_of_inertia: 1.4671237692264333e7 kg*m^2
lin_pos: [0.0, 0.0, 0.0] m
lin_vel: [0.0, 0.0, 0.0] m/s
lin_acc: [0.0, 0.0, 0.0] m/s^2
force: [0.0, 0.0, 0.0] N
external_body_force: [0.0, 0.0, 0.0] N
ang_pos: [0.0, 0.0, 0.0] rad
ang_vel: [0.0, 0.0, 0.0] rad/s
ang_acc: [0.0, 0.0, 0.0] rad/s^2
torque: [0.0, 0.0, 0.0] N*m
fixed: false
allow_x_acc: false
allow_y_acc: false
allow_z_acc: false
rotating: true
enabled: true
k_n: 1.0e7 N/m
k_t: 0.0 N/m
γ_n: 0.0 N/(m/s)
γ_t: 0.0 N/(m/s)
μ_s: 0.4
μ_d: 0.4
E: 2.0e7 Pa
ν: 0.185
tensile_strength: 0.0 Pa
shear_strength: 0.0 Pa
strength_heal_rate: Inf Pa/s
fracture_toughness: 0.0 m^0.5 Pa
c_o_v: 0.85
c_o_h: 0.0005
c_a_v: 0.4
c_a_h: 0.00025
pressure: 0.0 Pa
n_contacts: 0
contacts: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
pos_ij: [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]
δ_t: [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]
θ_t: [[0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0]]
granular_stress: [0.0, 0.0, 0.0] Pa
ocean_stress: [0.0, 0.0, 0.0] Pa
atmosphere_stress: [0.0, 0.0, 0.0] Pa
thermal_energy: 0.0 J
color: 0
[ Info: Testing grain value checks
[ Info: Testing grain comparison
gnuplot 5.2 patchlevel 2
[ Info: Testing GSD plotting
[ Info: test-grain-size-distribution.png
[ Info: test-grain-size-distribution.png
[ Info: test-grain-size-distribution.png
[ Info: Testing grain plotting
[ Info: test/test.grains.0.png
[ Info: - contact_radius
[ Info: test/test.grains.0.png
[ Info: - areal_radius
[ Info: test/test.grains.0.png
[ Info: - color
[ Info: test/test.grains.0.png
[ Info: - invalid field
[ Info: Testing external body force routines
[ Info: Testing zeroKinematics!()
Info: #### vtk.jl ####
[ Info: Writing simple simulation to VTK file
┌ Warning: detected extension '.1' does not correspond to dataset type.
│ Appending '.vtu' to filename.
└ @ WriteVTK ~/.julia/packages/WriteVTK/Kai9n/src/WriteVTK.jl:109
┌ Warning: detected extension '.1' does not correspond to dataset type.
│ Appending '.vts' to filename.
└ @ WriteVTK ~/.julia/packages/WriteVTK/Kai9n/src/WriteVTK.jl:109
Test Failed at /home/pkgeval/.julia/packages/Granular/5nDVL/test/vtk.jl:42
Expression: read(`$(cmd) $(grainpath)$(cmd_post)`, String) == grainchecksum
Evaluated: "fab0e1d530903b60e548994f7329858b2335d466863898883fc90e6f6b320ea5 test/test.grains.1.vtu\n" == "a698c24d46d15db97bb4d77d11ef1381d6cdf6536606d5c6482b063f47a20f68 test/test.grains.1.vtu\n"
ERROR: LoadError: LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/Granular/5nDVL/test/vtk.jl:42
in expression starting at /home/pkgeval/.julia/packages/Granular/5nDVL/test/runtests.jl:13
ERROR: Package Granular errored during testing
Stacktrace:
[1] pkgerror(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1561
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:327
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:314
[5] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope at none:16