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1.6.0-DEV-cbd854b0f4.log
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1.6.0-DEV-cbd854b0f4.log
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Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Reexport ──────────────────── v0.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed StanDump ──────────────────── v0.2.0
Installed Compat ────────────────────── v3.10.0
Installed OrderedCollections ────────── v1.2.0
Installed DocStringExtensions ───────── v0.8.1
Installed StanBase ──────────────────── v2.0.7
Installed DataFrames ────────────────── v0.21.2
Installed InvertedIndices ───────────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed PooledArrays ──────────────── v0.5.3
Installed TableTraits ───────────────── v1.0.0
Installed ElasticArrays ─────────────── v1.2.1
Installed FilePathsBase ─────────────── v0.8.0
Installed CategoricalArrays ─────────── v0.8.1
Installed DataStructures ────────────── v0.17.17
Installed Adapt ─────────────────────── v1.1.0
Installed StanSamples ───────────────── v0.1.0
Installed ArgCheck ──────────────────── v2.0.0
Installed UnPack ────────────────────── v1.0.1
Installed Tables ────────────────────── v1.0.4
Installed Parameters ────────────────── v0.12.1
Installed JSON ──────────────────────── v0.21.0
Installed Documenter ────────────────── v0.24.11
Installed WeakRefStrings ────────────── v0.6.2
Installed Parsers ───────────────────── v1.0.5
Installed DataAPI ───────────────────── v1.3.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed CSV ───────────────────────── v0.6.2
Updating `~/.julia/environments/v1.6/Project.toml`
[d0ee94f6] + StanBase v2.0.7
Updating `~/.julia/environments/v1.6/Manifest.toml`
[79e6a3ab] + Adapt v1.1.0
[dce04be8] + ArgCheck v2.0.0
[336ed68f] + CSV v0.6.2
[324d7699] + CategoricalArrays v0.8.1
[34da2185] + Compat v3.10.0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.2
[864edb3b] + DataStructures v0.17.17
[e2d170a0] + DataValueInterfaces v1.0.0
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.11
[fdbdab4c] + ElasticArrays v1.2.1
[48062228] + FilePathsBase v0.8.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.2.0
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.5
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[d0ee94f6] + StanBase v2.0.7
[9713c8f3] + StanDump v0.2.0
[52d0d7a9] + StanSamples v0.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[3a884ed6] + UnPack v1.0.1
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing StanBase
Status `/tmp/jl_WxpnWa/Project.toml`
[336ed68f] CSV v0.6.2
[a93c6f00] DataFrames v0.21.2
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.11
[d96e819e] Parameters v0.12.1
[d0ee94f6] StanBase v2.0.7
[9713c8f3] StanDump v0.2.0
[52d0d7a9] StanSamples v0.1.0
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9a3f8284] Random
[8dfed614] Test
[4ec0a83e] Unicode
Status `/tmp/jl_WxpnWa/Manifest.toml`
[79e6a3ab] Adapt v1.1.0
[dce04be8] ArgCheck v2.0.0
[336ed68f] CSV v0.6.2
[324d7699] CategoricalArrays v0.8.1
[34da2185] Compat v3.10.0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.2
[864edb3b] DataStructures v0.17.17
[e2d170a0] DataValueInterfaces v1.0.0
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.11
[fdbdab4c] ElasticArrays v1.2.1
[48062228] FilePathsBase v0.8.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.2.0
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.5
[2dfb63ee] PooledArrays v0.5.3
[189a3867] Reexport v0.2.0
[a2af1166] SortingAlgorithms v0.3.1
[d0ee94f6] StanBase v2.0.7
[9713c8f3] StanDump v0.2.0
[52d0d7a9] StanSamples v0.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[3a884ed6] UnPack v1.0.1
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/2u8Ih/src/StanBase.jl:73
/tmp/jl_X4Dykz/help.stan updated.
Basic HelpModel: Error During Test at /home/pkgeval/.julia/packages/StanBase/2u8Ih/test/runtests.jl:20
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/2u8Ih/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#478#479"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/2u8Ih/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] HelpModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanBase.Help, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/StanBase/2u8Ih/src/stanmodel/HelpModel.jl:26
[7] HelpModel at /home/pkgeval/.julia/packages/StanBase/2u8Ih/src/stanmodel/HelpModel.jl:20 [inlined] (repeats 2 times)
[8] top-level scope at /home/pkgeval/.julia/packages/StanBase/2u8Ih/test/runtests.jl:22
[9] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[10] top-level scope at /home/pkgeval/.julia/packages/StanBase/2u8Ih/test/runtests.jl:22
[11] include(::String) at ./client.jl:444
[12] top-level scope at none:6
[13] eval(::Module, ::Any) at ./boot.jl:331
[14] exec_options(::Base.JLOptions) at ./client.jl:260
[15] _start() at ./client.jl:485
Test Summary: | Error Total
Basic HelpModel | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanBase/2u8Ih/test/runtests.jl:20
ERROR: Package StanBase errored during testing
Stacktrace:
[1] pkgerror(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1561
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:327
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:314
[5] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope at none:16