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1.6.0-DEV-cbd854b0f4.log
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Julia Version 1.6.0-DEV.185
Commit cbd854b0f4 (2020-06-06 13:20 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Compat ─────────────────────── v3.10.0
Installed RecipesBase ────────────────── v1.0.1
Installed OrderedCollections ─────────── v1.2.0
Installed DocStringExtensions ────────── v0.8.1
Installed StanBase ───────────────────── v2.0.7
Installed DataFrames ─────────────────── v0.21.2
Installed StanSample ─────────────────── v2.1.5
Installed Reexport ───────────────────── v0.2.0
Installed PDMats ─────────────────────── v0.9.12
Installed DataValueInterfaces ────────── v1.0.0
Installed StanDump ───────────────────── v0.2.0
Installed InvertedIndices ────────────── v1.0.0
Installed QuadGK ─────────────────────── v2.3.1
Installed StatsBase ──────────────────── v0.33.0
Installed StaticArrays ───────────────── v0.12.3
Installed PooledArrays ───────────────── v0.5.3
Installed SortingAlgorithms ──────────── v0.3.1
Installed ElasticArrays ──────────────── v1.2.1
Installed TableTraits ────────────────── v1.0.0
Installed FilePathsBase ──────────────── v0.8.0
Installed CategoricalArrays ──────────── v0.8.1
Installed Adapt ──────────────────────── v1.1.0
Installed DataStructures ─────────────── v0.17.17
Installed Documenter ─────────────────── v0.24.11
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed StanSamples ────────────────── v0.1.0
Installed ArgCheck ───────────────────── v2.0.0
Installed Rmath ──────────────────────── v0.6.1
Installed MacroTools ─────────────────── v0.5.5
Installed Parameters ─────────────────── v0.12.1
Installed JSON ───────────────────────── v0.21.0
Installed UnPack ─────────────────────── v1.0.1
Installed GenericLinearAlgebra ───────── v0.2.3
Installed WeakRefStrings ─────────────── v0.6.2
Installed OpenBLAS_jll ───────────────── v0.3.9+4
Installed Distributions ──────────────── v0.23.4
Installed Tables ─────────────────────── v1.0.4
Installed FillArrays ─────────────────── v0.8.10
Installed Parsers ────────────────────── v1.0.5
Installed Arpack ─────────────────────── v0.4.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Requires ───────────────────── v1.0.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DataAPI ────────────────────── v1.3.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed MonteCarloMeasurements ─────── v0.8.12
Installed Missings ───────────────────── v0.4.3
Installed StatsFuns ──────────────────── v0.9.5
Installed SpecialFunctions ───────────── v0.10.3
Installed CSV ────────────────────────── v0.6.2
Updating `~/.julia/environments/v1.6/Project.toml`
[c1514b29] + StanSample v2.1.5
Updating `~/.julia/environments/v1.6/Manifest.toml`
[79e6a3ab] + Adapt v1.1.0
[dce04be8] + ArgCheck v2.0.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[336ed68f] + CSV v0.6.2
[324d7699] + CategoricalArrays v0.8.1
[34da2185] + Compat v3.10.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.2
[864edb3b] + DataStructures v0.17.17
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.4
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.11
[fdbdab4c] + ElasticArrays v1.2.1
[48062228] + FilePathsBase v0.8.0
[1a297f60] + FillArrays v0.8.10
[14197337] + GenericLinearAlgebra v0.2.3
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[0987c9cc] + MonteCarloMeasurements v0.8.12
[4536629a] + OpenBLAS_jll v0.3.9+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.2.0
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.5
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v1.0.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[d0ee94f6] + StanBase v2.0.7
[9713c8f3] + StanDump v0.2.0
[c1514b29] + StanSample v2.1.5
[52d0d7a9] + StanSamples v0.1.0
[90137ffa] + StaticArrays v0.12.3
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[3a884ed6] + UnPack v1.0.1
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing StanSample
Status `/tmp/jl_At9d52/Project.toml`
[336ed68f] CSV v0.6.2
[a93c6f00] DataFrames v0.21.2
[ffbed154] DocStringExtensions v0.8.1
[0987c9cc] MonteCarloMeasurements v0.8.12
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[d0ee94f6] StanBase v2.0.7
[c1514b29] StanSample v2.1.5
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[8dfed614] Test
[4ec0a83e] Unicode
Status `/tmp/jl_At9d52/Manifest.toml`
[79e6a3ab] Adapt v1.1.0
[dce04be8] ArgCheck v2.0.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[336ed68f] CSV v0.6.2
[324d7699] CategoricalArrays v0.8.1
[34da2185] Compat v3.10.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.2
[864edb3b] DataStructures v0.17.17
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.4
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.11
[fdbdab4c] ElasticArrays v1.2.1
[48062228] FilePathsBase v0.8.0
[1a297f60] FillArrays v0.8.10
[14197337] GenericLinearAlgebra v0.2.3
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[0987c9cc] MonteCarloMeasurements v0.8.12
[4536629a] OpenBLAS_jll v0.3.9+4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.2.0
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.5
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v1.0.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[d0ee94f6] StanBase v2.0.7
[9713c8f3] StanDump v0.2.0
[c1514b29] StanSample v2.1.5
[52d0d7a9] StanSamples v0.1.0
[90137ffa] StaticArrays v0.12.3
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[3a884ed6] UnPack v1.0.1
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/2u8Ih/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/2u8Ih/src/StanBase.jl:73
/home/pkgeval/.julia/packages/StanSample/JBWC4/test/test_bernoulli/tmp/bernoulli.stan updated.
Bernoulli_01 array tests: Error During Test at /home/pkgeval/.julia/packages/StanSample/JBWC4/test/runtests.jl:11
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/2u8Ih/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#478#479"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/2u8Ih/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] SampleModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanSample.Sample) at /home/pkgeval/.julia/packages/StanSample/JBWC4/src/stanmodel/SampleModel.jl:58
[7] top-level scope at /home/pkgeval/.julia/packages/StanSample/JBWC4/test/test_bernoulli/test_bernoulli_array_01.jl:24
[8] include(::String) at ./client.jl:444
[9] top-level scope at /home/pkgeval/.julia/packages/StanSample/JBWC4/test/runtests.jl:12
[10] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1115
[11] top-level scope at /home/pkgeval/.julia/packages/StanSample/JBWC4/test/runtests.jl:12
[12] include(::String) at ./client.jl:444
[13] top-level scope at none:6
[14] eval(::Module, ::Any) at ./boot.jl:331
[15] exec_options(::Base.JLOptions) at ./client.jl:260
[16] _start() at ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/StanSample/JBWC4/test/test_bernoulli/test_bernoulli_array_01.jl:24
Test Summary: | Error Total
Bernoulli_01 array tests | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanSample/JBWC4/test/runtests.jl:11
ERROR: Package StanSample errored during testing
Stacktrace:
[1] pkgerror(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1561
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:327
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:314
[5] #test#61 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope at none:16