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1.5.1-pre-0d71d8cd8b.log
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Julia Version 1.5.1-pre.28
Commit 0d71d8cd8b (2020-08-14 20:35 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed QuadGK ─────────────────────── v2.4.0
Installed Parsers ────────────────────── v1.0.10
Installed TranscodingStreams ─────────── v0.9.5
Installed SpecialFunctions ───────────── v0.10.3
Installed StatsBase ──────────────────── v0.33.0
Installed ForwardDiff ────────────────── v0.10.12
Installed PDMats ─────────────────────── v0.10.0
Installed HDF5_jll ───────────────────── v1.10.5+5
Installed SortingAlgorithms ──────────── v0.3.1
Installed Blosc ──────────────────────── v0.7.0
Installed LaTeXStrings ───────────────── v1.1.0
Installed HDF5 ───────────────────────── v0.13.4
Installed DCEMRI ─────────────────────── v0.2.2
Installed DataStructures ─────────────── v0.17.20
Installed StaticArrays ───────────────── v0.12.4
Installed Blosc_jll ──────────────────── v1.14.3+1
Installed MacroTools ─────────────────── v0.5.5
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed PyCall ─────────────────────── v1.91.4
Installed VersionParsing ─────────────── v1.2.0
Installed ArgParse ───────────────────── v1.1.0
Installed Zlib_jll ───────────────────── v1.2.11+15
Installed Calculus ───────────────────── v0.5.1
Installed Requires ───────────────────── v1.0.1
Installed NLSolversBase ──────────────── v7.6.3
Installed MAT ────────────────────────── v0.8.0
Installed Reexport ───────────────────── v0.2.0
Installed CodecZlib ──────────────────── v0.7.0
Installed LsqFit ─────────────────────── v0.11.0
Installed Conda ──────────────────────── v1.4.1
Installed Compat ─────────────────────── v3.13.0
Installed DiffResults ────────────────── v1.0.2
Installed Missings ───────────────────── v0.4.3
Installed FixedPointNumbers ──────────── v0.8.4
Installed FiniteDiff ─────────────────── v2.5.2
Installed CommonSubexpressions ───────── v0.3.0
Installed NaNMath ────────────────────── v0.3.4
Installed JSON ───────────────────────── v0.21.0
Installed FillArrays ─────────────────── v0.9.4
Installed Distributions ──────────────── v0.23.9
Installed PyPlot ─────────────────────── v2.9.0
Installed OptimBase ──────────────────── v2.0.1
Installed DiffRules ──────────────────── v1.0.1
Installed ArrayInterface ─────────────── v2.11.0
Installed OrderedCollections ─────────── v1.3.0
Installed Rmath ──────────────────────── v0.6.1
Installed Zstd_jll ───────────────────── v1.4.5+0
Installed StatsFuns ──────────────────── v0.9.5
Installed BufferedStreams ────────────── v1.0.0
Installed Lz4_jll ────────────────────── v1.9.2+2
Installed ColorTypes ─────────────────── v0.10.8
Installed TextWrap ───────────────────── v1.0.1
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed DataAPI ────────────────────── v1.3.0
Installed Colors ─────────────────────── v0.12.3
Updating `~/.julia/environments/v1.5/Project.toml`
[2b3899e7] + DCEMRI v0.2.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[c7e460c6] + ArgParse v1.1.0
[4fba245c] + ArrayInterface v2.11.0
[a74b3585] + Blosc v0.7.0
[0b7ba130] + Blosc_jll v1.14.3+1
[e1450e63] + BufferedStreams v1.0.0
[49dc2e85] + Calculus v0.5.1
[944b1d66] + CodecZlib v0.7.0
[3da002f7] + ColorTypes v0.10.8
[5ae59095] + Colors v0.12.3
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.13.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[2b3899e7] + DCEMRI v0.2.2
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.20
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[31c24e10] + Distributions v0.23.9
[1a297f60] + FillArrays v0.9.4
[6a86dc24] + FiniteDiff v2.5.2
[53c48c17] + FixedPointNumbers v0.8.4
[f6369f11] + ForwardDiff v0.10.12
[f67ccb44] + HDF5 v0.13.4
[0234f1f7] + HDF5_jll v1.10.5+5
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.1.0
[2fda8390] + LsqFit v0.11.0
[5ced341a] + Lz4_jll v1.9.2+2
[23992714] + MAT v0.8.0
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.3
[77ba4419] + NaNMath v0.3.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[87e2bd06] + OptimBase v2.0.1
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.10.0
[69de0a69] + Parsers v1.0.10
[438e738f] + PyCall v1.91.4
[d330b81b] + PyPlot v2.9.0
[1fd47b50] + QuadGK v2.4.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[b718987f] + TextWrap v1.0.1
[3bb67fe8] + TranscodingStreams v0.9.5
[81def892] + VersionParsing v1.2.0
[83775a58] + Zlib_jll v1.2.11+15
[3161d3a3] + Zstd_jll v1.4.5+0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building HDF5 ──→ `~/.julia/packages/HDF5/cvKpY/deps/build.log`
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Testing DCEMRI
Status `/tmp/jl_67cT8a/Project.toml`
[c7e460c6] ArgParse v1.1.0
[49dc2e85] Calculus v0.5.1
[2b3899e7] DCEMRI v0.2.2
[2fda8390] LsqFit v0.11.0
[23992714] MAT v0.8.0
[d330b81b] PyPlot v2.9.0
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[44cfe95a] Pkg
[de0858da] Printf
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_67cT8a/Manifest.toml`
[c7e460c6] ArgParse v1.1.0
[4fba245c] ArrayInterface v2.11.0
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[e1450e63] BufferedStreams v1.0.0
[49dc2e85] Calculus v0.5.1
[944b1d66] CodecZlib v0.7.0
[3da002f7] ColorTypes v0.10.8
[5ae59095] Colors v0.12.3
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[2b3899e7] DCEMRI v0.2.2
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.17.20
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[31c24e10] Distributions v0.23.9
[1a297f60] FillArrays v0.9.4
[6a86dc24] FiniteDiff v2.5.2
[53c48c17] FixedPointNumbers v0.8.4
[f6369f11] ForwardDiff v0.10.12
[f67ccb44] HDF5 v0.13.4
[0234f1f7] HDF5_jll v1.10.5+5
[682c06a0] JSON v0.21.0
[b964fa9f] LaTeXStrings v1.1.0
[2fda8390] LsqFit v0.11.0
[5ced341a] Lz4_jll v1.9.2+2
[23992714] MAT v0.8.0
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.3
[77ba4419] NaNMath v0.3.4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[87e2bd06] OptimBase v2.0.1
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[69de0a69] Parsers v1.0.10
[438e738f] PyCall v1.91.4
[d330b81b] PyPlot v2.9.0
[1fd47b50] QuadGK v2.4.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[b718987f] TextWrap v1.0.1
[3bb67fe8] TranscodingStreams v0.9.5
[81def892] VersionParsing v1.2.0
[83775a58] Zlib_jll v1.2.11+15
[3161d3a3] Zstd_jll v1.4.5+0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:554
Producing noisy version of /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q4/qiba4.mat
Noisy data saved to /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q4/qiba4noisy.mat
Running analysis of noise-free QIBA v4 data ...
running models
found multi-flip data
fitting R1 relaxation rate to multi-flip data
running 6 x 90 points on one CPU core
processed 90 voxels in 6.7 s (13.4 vox/s)
computing signal enhancement ratios
converting DCE signal to effective R1
converting effective R1 to tracer tissue concentration Ct
fitting DCE data
attempting Extended Tofts-Kety model
running 661 x 90 points on one CPU core
processed 90 voxels in 1.4 s (66.3 vox/s)
Kt
RMSE: 7.213202793823065 %
errmax: 23.495319753819818
CCC: 0.9998008500527296
ve
RMSE: 19.126621623373172 %
errmax: 99.99999999999996
CCC: 0.890428264021989
vp
RMSE: 24.196101810002325 %
errmax: 92.52778323067734 %
CCC: 0.9999199032934325
Running analysis of noisy QIBA v4 data ...
running models
found multi-flip data
fitting R1 relaxation rate to multi-flip data
running 6 x 9000 points on one CPU core
processed 9000 voxels in 2.0 s (4493.8 vox/s)
computing signal enhancement ratios
converting DCE signal to effective R1
converting effective R1 to tracer tissue concentration Ct
fitting DCE data
attempting Extended Tofts-Kety model
running 661 x 9000 points on one CPU core
processed 9000 voxels in 56.0 s (160.7 vox/s)
Kt
RMSE: 35.737346511627706 %
errmax: 100.0
CCC: 0.6165539370929994
ve
RMSE: 41.23179508837144 %
errmax: 100.0
CCC: 0.6902101471042617
vp
RMSE: 49.04013541906952 %
errmax: 100.0 %
CCC: 0.9702429008315517
Validation complete. If saved, results can be found in /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q4.
QIBA v4 Extended Tofts Phantom: Test Failed at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:9
Expression: round(cccnoisy4[1], sigdigits = 2) >= 0.97
Evaluated: 0.62 >= 0.97
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:9
[2] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[3] top-level scope at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:6
QIBA v4 Extended Tofts Phantom: Test Failed at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:10
Expression: round(cccnoisy4[2], sigdigits = 2) >= 0.7
Evaluated: 0.69 >= 0.7
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:10
[2] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[3] top-level scope at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:6
Test Summary: | Pass Fail Total
QIBA v4 Extended Tofts Phantom | 4 2 6
ERROR: LoadError: Some tests did not pass: 4 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/test/runtests.jl:5
ERROR: Package DCEMRI errored during testing
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1566
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:328
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:315
[5] #test#61 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
[7] #test#60 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:66 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:66 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:65
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:65
[11] top-level scope at none:16