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1.5.1-pre-0d71d8cd8b.log
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1.5.1-pre-0d71d8cd8b.log
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Julia Version 1.5.1-pre.28
Commit 0d71d8cd8b (2020-08-14 20:35 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed HDF5_jll ────────── v1.10.5+5
Installed FixedPointNumbers ─ v0.5.3
Installed Blosc_jll ───────── v1.14.3+1
Installed Zstd_jll ────────── v1.4.5+0
Installed Zlib_jll ────────── v1.2.11+15
Installed HDF5 ────────────── v0.13.4
Installed EMIRT ───────────── v0.7.0
Installed FileIO ──────────── v1.4.1
Installed ColorTypes ──────── v0.7.5
Installed Blosc ───────────── v0.7.0
Installed Lz4_jll ─────────── v1.9.2+2
Installed Reexport ────────── v0.2.0
Installed Colors ──────────── v0.9.5
Updating `~/.julia/environments/v1.5/Project.toml`
[8acf8dda] + EMIRT v0.7.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[a74b3585] + Blosc v0.7.0
[0b7ba130] + Blosc_jll v1.14.3+1
[3da002f7] + ColorTypes v0.7.5
[5ae59095] + Colors v0.9.5
[8acf8dda] + EMIRT v0.7.0
[5789e2e9] + FileIO v1.4.1
[53c48c17] + FixedPointNumbers v0.5.3
[f67ccb44] + HDF5 v0.13.4
[0234f1f7] + HDF5_jll v1.10.5+5
[5ced341a] + Lz4_jll v1.9.2+2
[189a3867] + Reexport v0.2.0
[83775a58] + Zlib_jll v1.2.11+15
[3161d3a3] + Zstd_jll v1.4.5+0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building HDF5 → `~/.julia/packages/HDF5/cvKpY/deps/build.log`
Testing EMIRT
Status `/tmp/jl_2gLryO/Project.toml`
[5ae59095] Colors v0.9.5
[8acf8dda] EMIRT v0.7.0
[5789e2e9] FileIO v1.4.1
[53c48c17] FixedPointNumbers v0.5.3
[f67ccb44] HDF5 v0.13.4
[8ba89e20] Distributed
[8dfed614] Test
Status `/tmp/jl_2gLryO/Manifest.toml`
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[3da002f7] ColorTypes v0.7.5
[5ae59095] Colors v0.9.5
[8acf8dda] EMIRT v0.7.0
[5789e2e9] FileIO v1.4.1
[53c48c17] FixedPointNumbers v0.5.3
[f67ccb44] HDF5 v0.13.4
[0234f1f7] HDF5_jll v1.10.5+5
[5ced341a] Lz4_jll v1.9.2+2
[189a3867] Reexport v0.2.0
[83775a58] Zlib_jll v1.2.11+15
[3161d3a3] Zstd_jll v1.4.5+0
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Test Summary: | Pass Total
test IO | 6 6
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/aff.h5 ......done :)
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/lbl.h5 ......done :)
judec = Dict{Symbol,Float32}(:VIFSs => 0.65209204,:ri => 0.9090551,:VIm => 0.013707907,:VIFS => 0.78002024,:rem => 0.00040634486,:VI => 0.2534153,:res => 0.09053859,:rfm => 0.99934644,:rf => 0.9318045,:VIS => -0.2534153,:VIFSm => 0.9703931,:re => 0.09094494,:rfs => 0.87281424,:ris => 0.2877325,:VIs => 0.23970748,:rim => 0.6213226)
0.009527 seconds (25.60 k allocations: 410.547 KiB)
ecd = Dict{Symbol,Float32}(:VIFSs => 1.0000002,:ri => 1.0,:VIm => 0.0,:VIFS => 1.0000002,:rem => 0.0,:VI => -1.7881393f-7,:res => 0.0,:rfm => 1.0,:rf => 1.0,:VIS => 1.7881393f-7,:VIFSm => 1.0000002,:re => 0.0,:rfs => 1.0,:ris => 0.28813884,:VIs => 0.0,:rim => 0.71186113)
0.535463 seconds (1.06 M allocations: 22.345 MiB)
ecd = Dict{Symbol,Float32}(:VIFSs => 0.045672007,:ri => 0.28817847,:VIm => 0.0,:VIFS => 0.08735364,:rem => 0.0,:VI => 9.672697,:res => 0.7118215,:rfm => 1.0,:rf => 0.00011138609,:VIS => -9.672697,:VIFSm => 0.99981064,:re => 0.7118215,:rfs => 5.569615f-5,:ris => 0.28813884,:VIs => 9.672756,:rim => 3.9647926f-5)
Test Summary: | Pass Total
test evaluate | 2 2
test segmentation downsampling
create random segmentation for tests
test creating fake mst ...
test relabel_seg ....
1.310827 seconds (189.23 k allocations: 139.863 MiB)
test segid1N! ...
test modified serial version ...
7.073570 seconds (191.24 k allocations: 567.687 MiB, 3.33% gc time)
test modified serial version ...
6.388556 seconds (39 allocations: 558.002 MiB, 2.17% gc time)
test mask singletons ...
test removing singletons by masking ...
1.116765 seconds (17.11 M allocations: 328.690 MiB)
1.892962 seconds (17.05 M allocations: 325.295 MiB, 20.46% gc time)
Test Summary: | Pass Total
test segmentations | 2 2
transform affinitymap to edge list...
0.277872 seconds (2 allocations: 4.383 MiB)
0.307809 seconds (38 allocations: 16.385 MiB)
segment affinity map using connectivity analysis ...
0.069819 seconds (20 allocations: 6.032 MiB)
transform to uniform distribution ...
map to uniform distribution...get the permutation by sorting...... 0.609901 seconds (112.07 k allocations: 14.860 MiB)
done :)
done!
0.650050 seconds (112.13 k allocations: 35.863 MiB)
exchange x and z axis of affinity map...
exchange x and z of affinity map
0.066664 seconds (66.14 k allocations: 7.432 MiB)
Test Summary: |
test affinitymap | No tests
Testing EMIRT tests passed