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1.6.0-DEV-f05b821fe7.log
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Julia Version 1.6.0-DEV.1218
Commit f05b821fe7 (2020-10-14 11:56 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
Resolving package versions...
Installed MbedTLS_jll ──────── v2.16.8+0
Installed Gumbo_jll ────────── v0.10.1+1
Installed Zlib_jll ─────────── v1.2.11+17
Installed XMLDict ──────────── v0.4.1
Installed EzXML ────────────── v1.1.0
Installed BioServices ──────── v0.3.2
Installed OrderedCollections ─ v1.3.1
Installed AbstractTrees ────── v0.3.3
Installed IniFile ──────────── v0.5.0
Installed JLLWrappers ──────── v1.1.2
Installed XML2_jll ─────────── v2.9.10+2
Installed Gumbo ────────────── v0.8.0
Installed IterTools ────────── v1.3.0
Installed JSON ─────────────── v0.21.1
Installed MbedTLS ──────────── v1.0.2
Installed Parsers ──────────── v1.0.11
Installed Libiconv_jll ─────── v1.16.0+6
Installed HTTP ─────────────── v0.8.19
Updating `~/.julia/environments/v1.6/Project.toml`
[a0d4ced5] + BioServices v0.3.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.3
[a0d4ced5] + BioServices v0.3.2
[8f5d6c58] + EzXML v1.1.0
[708ec375] + Gumbo v0.8.0
[528830af] + Gumbo_jll v0.10.1+1
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[c8e1da08] + IterTools v1.3.0
[692b3bcd] + JLLWrappers v1.1.2
[682c06a0] + JSON v0.21.1
[94ce4f54] + Libiconv_jll v1.16.0+6
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[bac558e1] + OrderedCollections v1.3.1
[69de0a69] + Parsers v1.0.11
[02c8fc9c] + XML2_jll v2.9.10+2
[228000da] + XMLDict v0.4.1
[83775a58] + Zlib_jll v1.2.11+17
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Precompiling project... (tip: to disable auto-precompilation set ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0)
[90m[32m ✓ [39mIniFile[39m
[90m[32m ✓ [39mJLLWrappers[39m
[90m[32m ✓ [39mOrderedCollections[39m
[90m[32m ✓ [39mAbstractTrees[39m
[90m[32m ✓ [39mIterTools[39m
[90m[32m ✓ [39mMbedTLS_jll[39m
[90m[32m ✓ [39mLibiconv_jll[39m
[90m[32m ✓ [39mGumbo_jll[39m
[90m[32m ✓ [39mZlib_jll[39m
[90m[32m ✓ [39mGumbo[39m
[90m[32m ✓ [39mMbedTLS[39m
[90m[32m ✓ [39mXML2_jll[39m
[90m[32m ✓ [39mParsers[39m
[90m[32m ✓ [39mEzXML[39m
[90m[32m ✓ [39mJSON[39m
[90m[32m ✓ [39mXMLDict[39m
[90m[32m ✓ [39mHTTP[39m
[32m ✓ [39mBioServices
18 dependencies successfully precompiled
Testing BioServices
Status `/tmp/jl_SkkeDY/Project.toml`
[a0d4ced5] BioServices v0.3.2
[708ec375] Gumbo v0.8.0
[cd3eb016] HTTP v0.8.19
[682c06a0] JSON v0.21.1
[228000da] XMLDict v0.4.1
[ade2ca70] Dates
[8dfed614] Test
Status `/tmp/jl_SkkeDY/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[a0d4ced5] BioServices v0.3.2
[8f5d6c58] EzXML v1.1.0
[708ec375] Gumbo v0.8.0
[528830af] Gumbo_jll v0.10.1+1
[cd3eb016] HTTP v0.8.19
[83e8ac13] IniFile v0.5.0
[c8e1da08] IterTools v1.3.0
[692b3bcd] JLLWrappers v1.1.2
[682c06a0] JSON v0.21.1
[94ce4f54] Libiconv_jll v1.16.0+6
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[bac558e1] OrderedCollections v1.3.1
[69de0a69] Parsers v1.0.11
[02c8fc9c] XML2_jll v2.9.10+2
[228000da] XMLDict v0.4.1
[83775a58] Zlib_jll v1.2.11+17
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Running tests:
-----------------------------------------
-----------------------------------------
Testing: EUtils
-----------------------------------------
-----------------------------------------
epost: Error During Test at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:26
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(500, "POST", "/entrez/eutils/epost.fcgi", HTTP.Messages.Response:
"""
HTTP/1.1 500 Internal Server Error
Date: Wed, 14 Oct 2020 15:17:38 GMT
Server: Finatra
Strict-Transport-Security: max-age=31536000; includeSubDomains; preload
Referrer-Policy: origin-when-cross-origin
Content-Security-Policy: upgrade-insecure-requests
Content-Length: 87
Content-Type: application/json
Vary: Accept-Encoding
X-UA-Compatible: IE=Edge
X-XSS-Protection: 1; mode=block
Connection: close
{"error":"/lbsm/eutils_lb -> Neg","api-key":"128.30.92.239","type":"ip",
"status":"ok"}""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any, N} where N; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:22
[2] (::Base.var"#67#69"{Base.var"#67#68#70"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:301
[3] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol, Symbol}, NamedTuple{(:reached_redirect_limit, :retry_non_idempotent), Tuple{Bool, Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[5] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String; kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol, Symbol}, NamedTuple{(:reached_redirect_limit, :retry_non_idempotent), Tuple{Bool, Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:retry_non_idempotent,), Tuple{Bool}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[7] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String, query::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:retry_non_idempotent,), Tuple{Bool}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[8] epost(ctx::Dict{Any, Any}; params::Base.Iterators.Pairs{Symbol, String, Tuple{Symbol, Symbol}, NamedTuple{(:db, :id), Tuple{String, String}}})
@ BioServices.EUtils ~/.julia/packages/BioServices/KPZxN/src/eutils.jl:97
[9] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:29
[10] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[11] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:27
[12] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[13] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:4
[14] include(mod::Module, _path::String)
@ Base ./Base.jl:389
[15] include(x::String)
@ Main.TestBioServices ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
[16] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:23
[17] include(fname::String)
@ Base.MainInclude ./client.jl:444
[18] top-level scope
@ none:6
[19] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[20] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[21] _start()
@ Base ./client.jl:485
efetch: Error During Test at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:76
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(500, "POST", "/entrez/eutils/efetch.fcgi", HTTP.Messages.Response:
"""
HTTP/1.1 500 Internal Server Error
Date: Wed, 14 Oct 2020 15:18:37 GMT
Server: Finatra
Strict-Transport-Security: max-age=31536000; includeSubDomains; preload
Referrer-Policy: origin-when-cross-origin
Content-Security-Policy: upgrade-insecure-requests
Content-Length: 87
Content-Type: application/json
Vary: Accept-Encoding
X-UA-Compatible: IE=Edge
X-XSS-Protection: 1; mode=block
Connection: close
{"error":"/lbsm/eutils_lb -> Neg","api-key":"128.30.92.239","type":"ip",
"status":"ok"}""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any, N} where N; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:22
[2] (::Base.var"#67#69"{Base.var"#67#68#70"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:301
[3] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol, Symbol}, NamedTuple{(:reached_redirect_limit, :retry_non_idempotent), Tuple{Bool, Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[5] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String; kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol, Symbol}, NamedTuple{(:reached_redirect_limit, :retry_non_idempotent), Tuple{Bool, Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:retry_non_idempotent,), Tuple{Bool}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[7] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::String, query::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:retry_non_idempotent,), Tuple{Bool}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[8] #efetch#5
@ ~/.julia/packages/BioServices/KPZxN/src/eutils.jl:126 [inlined]
[9] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:78
[10] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[11] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:77
[12] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[13] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:4
[14] include(mod::Module, _path::String)
@ Base ./Base.jl:389
[15] include(x::String)
@ Main.TestBioServices ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
[16] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:23
[17] include(fname::String)
@ Base.MainInclude ./client.jl:444
[18] top-level scope
@ none:6
[19] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[20] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[21] _start()
@ Base ./client.jl:485
egquery: Error During Test at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:127
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(500, "GET", "/entrez/eutils/egquery.fcgi?term=%28Asthma%5BMeSH%20Major%20Topic%5D%29%20AND%0A%28%221%2F1%2F2018%22%5BDate%20-%20Publication%5D%20%3A%0A%223000%22%5BDate%20-%20Publication%5D%29", HTTP.Messages.Response:
"""
HTTP/1.1 500 Internal Server Error
Date: Wed, 14 Oct 2020 15:18:50 GMT
Server: Finatra
Strict-Transport-Security: max-age=31536000; includeSubDomains; preload
Referrer-Policy: origin-when-cross-origin
Content-Security-Policy: upgrade-insecure-requests
Content-Length: 89
Content-Type: application/json
Vary: Accept-Encoding
X-UA-Compatible: IE=Edge
X-XSS-Protection: 1; mode=block
Connection: close
{"error":"error forwarding request","api-key":"128.30.92.239","type":"ip",
"status":"ok"}""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any, N} where N; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:22
[2] (::Base.var"#67#69"{Base.var"#67#68#70"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:301
[3] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[5] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[7] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:21
[8] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}, query::Dict{Symbol, Any}, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[9] #egquery#7
@ ~/.julia/packages/BioServices/KPZxN/src/eutils.jl:152 [inlined]
[10] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:129
[11] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[12] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:128
[13] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[14] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:4
[15] include(mod::Module, _path::String)
@ Base ./Base.jl:389
[16] include(x::String)
@ Main.TestBioServices ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
[17] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:23
[18] include(fname::String)
@ Base.MainInclude ./client.jl:444
[19] top-level scope
@ none:6
[20] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[21] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[22] _start()
@ Base ./client.jl:485
ecitmatch: Error During Test at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:148
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(500, "GET", "/entrez/eutils/ecitmatch.cgi?bdata=proc%20natl%20acad%20sci%20u%20s%20a%7C1991%7C88%7C3248%7Cmann%20bj%7CArt1%7C&retmode=xml&db=pubmed", HTTP.Messages.Response:
"""
HTTP/1.1 500 Internal Server Error
Date: Wed, 14 Oct 2020 15:19:06 GMT
Server: Finatra
Strict-Transport-Security: max-age=31536000; includeSubDomains; preload
Referrer-Policy: origin-when-cross-origin
Content-Security-Policy: upgrade-insecure-requests
Content-Length: 89
Content-Type: application/json
Vary: Accept-Encoding
X-UA-Compatible: IE=Edge
X-XSS-Protection: 1; mode=block
Connection: close
{"error":"error forwarding request","api-key":"128.30.92.239","type":"ip",
"status":"ok"}""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any, N} where N; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:22
[2] (::Base.var"#67#69"{Base.var"#67#68#70"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:301
[3] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[5] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[7] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:21
[8] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}, query::Dict{Symbol, Any}, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[9] #ecitmatch#9
@ ~/.julia/packages/BioServices/KPZxN/src/eutils.jl:176 [inlined]
[10] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:150
[11] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[12] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:149
[13] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1144
[14] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:4
[15] include(mod::Module, _path::String)
@ Base ./Base.jl:389
[16] include(x::String)
@ Main.TestBioServices ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
[17] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:23
[18] include(fname::String)
@ Base.MainInclude ./client.jl:444
[19] top-level scope
@ none:6
[20] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[21] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[22] _start()
@ Base ./client.jl:485
Test Summary: | Pass Error Total
EUtils | 27 4 31
einfo | 4 4
esearch | 4 4
epost | 1 1
esummary | 12 12
efetch | 1 1
elink | 3 3
egquery | 1 1
espell | 4 4
ecitmatch | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 27 passed, 0 failed, 4 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:2
in expression starting at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
ERROR: Package BioServices errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1632
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:333
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:320
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:70 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:69 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66
[11] top-level scope
@ none:31