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1.6.0-DEV-f05b821fe7.log
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Julia Version 1.6.0-DEV.1218
Commit f05b821fe7 (2020-10-14 11:56 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-11.0.0 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
JULIA_MAX_NUM_PRECOMPILE_FILES = 9223372036854775807
Resolving package versions...
Installed AbstractFFTs ───────────────── v0.5.0
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed StatsFuns ──────────────────── v0.9.5
Installed PDMats ─────────────────────── v0.10.1
Installed OrderedCollections ─────────── v1.3.1
Installed Tables ─────────────────────── v1.1.0
Installed GEMPIC ─────────────────────── v0.2.2
Installed InvertedIndices ────────────── v1.0.0
Installed DataFrames ─────────────────── v0.21.8
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed DataAPI ────────────────────── v1.3.0
Installed Compat ─────────────────────── v3.20.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Missings ───────────────────── v0.4.4
Installed QuadGK ─────────────────────── v2.4.1
Installed JLD2 ───────────────────────── v0.1.14
Installed SpecialFunctions ───────────── v0.10.3
Installed DataStructures ─────────────── v0.17.20
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed FileIO ─────────────────────── v1.4.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Parsers ────────────────────── v1.0.11
Installed Rmath ──────────────────────── v0.6.1
Installed FillArrays ─────────────────── v0.9.7
Installed Sobol ──────────────────────── v1.4.0
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed MKL_jll ────────────────────── v2020.2.254+0
Installed CodecZlib ──────────────────── v0.7.0
Installed TableTraits ────────────────── v1.0.0
Installed StructTypes ────────────────── v1.1.0
Installed StaticArrays ───────────────── v0.12.4
Installed Distributions ──────────────── v0.23.12
Installed Reexport ───────────────────── v0.2.0
Installed DataValueInterfaces ────────── v1.0.0
Installed PooledArrays ───────────────── v0.5.3
Installed Zlib_jll ───────────────────── v1.2.11+17
Installed FastGaussQuadrature ────────── v0.4.3
Installed TranscodingStreams ─────────── v0.9.5
Installed FFTW ───────────────────────── v1.2.4
Installed JLLWrappers ────────────────── v1.1.2
Installed SortingAlgorithms ──────────── v0.3.1
Installed JSON ───────────────────────── v0.21.1
Installed CategoricalArrays ──────────── v0.8.3
Installed StatsBase ──────────────────── v0.33.2
Updating `~/.julia/environments/v1.6/Project.toml`
[b6d65c3a] + GEMPIC v0.2.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[324d7699] + CategoricalArrays v0.8.3
[944b1d66] + CodecZlib v0.7.0
[34da2185] + Compat v3.20.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.8
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.12
[7a1cc6ca] + FFTW v1.2.4
[f5851436] + FFTW_jll v3.3.9+5
[442a2c76] + FastGaussQuadrature v0.4.3
[5789e2e9] + FileIO v1.4.3
[1a297f60] + FillArrays v0.9.7
[b6d65c3a] + GEMPIC v0.2.2
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.14
[692b3bcd] + JLLWrappers v1.1.2
[682c06a0] + JSON v0.21.1
[856f044c] + MKL_jll v2020.2.254+0
[e1d29d7a] + Missings v0.4.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[69de0a69] + Parsers v1.0.11
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.4.1
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[ed01d8cd] + Sobol v1.4.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.2
[4c63d2b9] + StatsFuns v0.9.5
[856f2bd8] + StructTypes v1.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.1.0
[3bb67fe8] + TranscodingStreams v0.9.5
[83775a58] + Zlib_jll v1.2.11+17
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building FFTW → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8b7c16b56936047ca41bf25effa137ae0b381ae8/build.log`
Precompiling project... (tip: to disable auto-precompilation set ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0)
[90m[32m ✓ [39mIteratorInterfaceExtensions[39m
[90m[32m ✓ [39mDataValueInterfaces[39m
[90m[32m ✓ [39mDataAPI[39m
[90m[32m ✓ [39mJLLWrappers[39m
[90m[32m ✓ [39mTableTraits[39m
[90m[32m ✓ [39mReexport[39m
[90m[32m ✓ [39mInvertedIndices[39m
[90m[32m ✓ [39mOrderedCollections[39m
[90m[32m ✓ [39mStructTypes[39m
[90m[32m ✓ [39mAbstractFFTs[39m
[90m[32m ✓ [39mPooledArrays[39m
[90m[32m ✓ [39mPDMats[39m
[90m[32m ✓ [39mMissings[39m
[90m[32m ✓ [39mCompat[39m
[90m[32m ✓ [39mTranscodingStreams[39m
[90m[32m ✓ [39mTables[39m
[90m[32m ✓ [39mFillArrays[39m
[90m[32m ✓ [39mSobol[39m
[90m[32m ✓ [39mFFTW_jll[39m
[90m[32m ✓ [39mIntelOpenMP_jll[39m
[90m[32m ✓ [39mRmath_jll[39m
[90m[32m ✓ [39mCompilerSupportLibraries_jll[39m
[90m[32m ✓ [39mZlib_jll[39m
[90m[32m ✓ [39mCodecZlib[39m
[90m[32m ✓ [39mRmath[39m
[90m[32m ✓ [39mDataStructures[39m
[90m[32m ✓ [39mSortingAlgorithms[39m
[90m[32m ✓ [39mMKL_jll[39m
[90m[32m ✓ [39mOpenSpecFun_jll[39m
[90m[32m ✓ [39mQuadGK[39m
[90m[32m ✓ [39mParsers[39m
[90m[32m ✓ [39mStaticArrays[39m
[90m[32m ✓ [39mFFTW[39m
[90m[32m ✓ [39mJSON[39m
[90m[32m ✓ [39mStatsBase[39m
[90m[32m ✓ [39mCategoricalArrays[39m
[90m[32m ✓ [39mFileIO[39m
[90m[32m ✓ [39mSpecialFunctions[39m
[90m[32m ✓ [39mFastGaussQuadrature[39m
[90m[32m ✓ [39mStatsFuns[39m
[90m[32m ✓ [39mJLD2[39m
[90m[32m ✓ [39mDataFrames[39m
[90m[32m ✓ [39mDistributions[39m
[32m ✓ [39mGEMPIC
44 dependencies successfully precompiled
Testing GEMPIC
Status `/tmp/jl_p3zK73/Project.toml`
[a93c6f00] DataFrames v0.21.8
[31c24e10] Distributions v0.23.12
[7a1cc6ca] FFTW v1.2.4
[442a2c76] FastGaussQuadrature v0.4.3
[5789e2e9] FileIO v1.4.3
[b6d65c3a] GEMPIC v0.2.2
[033835bb] JLD2 v0.1.14
[ed01d8cd] Sobol v1.4.0
[90137ffa] StaticArrays v0.12.4
[37e2e46d] LinearAlgebra
[44cfe95a] Pkg
[de0858da] Printf
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_p3zK73/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[324d7699] CategoricalArrays v0.8.3
[944b1d66] CodecZlib v0.7.0
[34da2185] Compat v3.20.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.8
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.12
[7a1cc6ca] FFTW v1.2.4
[f5851436] FFTW_jll v3.3.9+5
[442a2c76] FastGaussQuadrature v0.4.3
[5789e2e9] FileIO v1.4.3
[1a297f60] FillArrays v0.9.7
[b6d65c3a] GEMPIC v0.2.2
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.1.14
[692b3bcd] JLLWrappers v1.1.2
[682c06a0] JSON v0.21.1
[856f044c] MKL_jll v2020.2.254+0
[e1d29d7a] Missings v0.4.4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.10.1
[69de0a69] Parsers v1.0.11
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.4.1
[189a3867] Reexport v0.2.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[ed01d8cd] Sobol v1.4.0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.2
[4c63d2b9] StatsFuns v0.9.5
[856f2bd8] StructTypes v1.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[3bb67fe8] TranscodingStreams v0.9.5
[83775a58] Zlib_jll v1.2.11+17
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Test Summary: | Pass Total
VM 1D1V with spin | 9 9
thdiag.data = 6×11 DataFrame
│ Row │ Time │ KineticEnergy │ Momentum1 │ Momentum2 │ PotentialEnergyE1 │ PotentialEnergyE2 │ PotentialEnergyB3 │ Transfer │ VVB │ Poynting │ ErrorPoisson │
│ │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │ Float64 │
├─────┼─────────┼───────────────┼─────────────┼──────────────┼───────────────────┼───────────────────┼───────────────────┼─────────────┼──────────────┼────────────┼──────────────┤
│ 1 │ 0.0 │ 0.200414 │ 0.0 │ 0.0 │ 2.48154e-7 │ 0.0 │ 2.46528e-8 │ 0.0 │ 0.0 │ 0.0 │ 0.00044278 │
│ 2 │ 0.05 │ 0.200414 │ -1.55833e-8 │ -1.92604e-11 │ 2.49906e-7 │ 9.59963e-11 │ 2.45566e-8 │ -6.02554e-8 │ -4.83392e-11 │ 1.91921e-9 │ 9.7048e-5 │
│ 3 │ 0.1 │ 0.200414 │ -3.06934e-8 │ -7.66222e-11 │ 2.69481e-7 │ 3.81567e-10 │ 2.42699e-8 │ -3.94117e-7 │ -9.61025e-11 │ 3.8039e-9 │ 0.000353635 │
│ 4 │ 0.15 │ 0.200414 │ -4.57982e-8 │ -1.70845e-10 │ 3.43173e-7 │ 8.49519e-10 │ 2.37978e-8 │ -1.15624e-6 │ -1.4272e-10 │ 5.62037e-9 │ 0.000700182 │
│ 5 │ 0.2 │ 0.200414 │ -6.20145e-8 │ -2.99902e-10 │ 5.16188e-7 │ 1.48806e-9 │ 2.31487e-8 │ -2.37905e-6 │ -1.87634e-10 │ 7.33641e-9 │ 0.00107941 │
│ 6 │ 0.25 │ 0.200413 │ -8.09672e-8 │ -4.6095e-10 │ 8.34822e-7 │ 2.28112e-9 │ 2.23342e-8 │ -4.07518e-6 │ -2.30304e-10 │ 8.92215e-9 │ 0.00162004 │
Test Summary: | Pass Total
PIC VM 1D2V | 5 5
Test Summary: | Pass Total
Mesh | 6 6
Test Summary: | Pass Total
spline pp 1d | 15 15
error Poisson 1.2098449631015029e-8
Test Summary: | Pass Total
Maxwell 1D FEM solver | 22 22
[ Info: Sobol non symmetric
abs.(mean .- mean_ref) = [7.647948840272534e-5, 0.0002475085565759018, 0.008824319487115345]
abs.(sigma .- sigma_ref) = [3.657929851463848e-5, 7.774968234494639e-6, 0.02427890408035438]
[ Info: Sobol symmetric
abs.(mean .- mean_ref) = [0.0, 0.0, 0.0]
abs.(sigma .- sigma_ref) = [0.0033103106985361563, 2.6760770223576563e-5, 0.04585476239877018]
[ Info: Random non symmetric
abs.(mean .- mean_ref) = [0.0013691850584667264, 0.00010076341250265188, 0.012399236490690966]
abs.(sigma .- sigma_ref) = [0.03268925874195716, 1.1507459417010521e-5, 0.0008499662872152314]
[ Info: Random symmetric
abs.(mean .- mean_ref) = [5.062616992290714e-14, 0.0, 0.0]
abs.(sigma .- sigma_ref) = [0.09673073608386673, 0.00014457320266456596, 0.0599497418806596]
[ Info: Sobol non symmetric
abs.(mean .- mean_ref) = [7.647948840272534e-5, 0.29991923688431893, 0.2912294554549264]
abs.(sigma .- sigma_ref) = [3.657929851463848e-5, 1.1970260912801927, 0.9151840994034588]
[ Info: Sobol symmetric
abs.(mean .- mean_ref) = [0.0, 8.00000000000245e-5, 8.00000000000245e-5]
abs.(sigma .- sigma_ref) = [0.0033103106985361563, 0.21947595324761804, 0.686429109503151]
Test Summary: | Pass Total
Sampling | 6 6
Test Summary: | Pass Total
Spin Sampling | 1 1
Test Summary: | Pass Total
particle-mesh coupling with spline 1d | 6 6
Test Summary: | Pass Total
Hamiltonian splitting | 35 35
Test Summary: | Pass Total
Hamiltonian splitting with spin | 1 1
Test Summary: | Pass Total
Hamiltonian splitting Boris | 11 11
Test Summary: | Pass Total
Save particles data into file | 2 2
Testing GEMPIC tests passed