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1.4.2-pre-58353fd273.log
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1.4.2-pre-58353fd273.log
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Julia Version 1.4.2-pre.13
Commit 58353fd273 (2020-05-10 17:03 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IniFile ───────────────────── v0.5.0
Installed Reexport ──────────────────── v0.2.0
Installed GetGene ───────────────────── v0.1.0
Installed TableTraits ───────────────── v1.0.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Parsers ───────────────────── v1.0.3
Installed OrderedCollections ────────── v1.2.0
Installed Tables ────────────────────── v1.0.4
Installed Missings ──────────────────── v0.4.3
Installed SortingAlgorithms ─────────── v0.3.1
Installed CategoricalArrays ─────────── v0.8.0
Installed PooledArrays ──────────────── v0.5.3
Installed Compat ────────────────────── v3.9.1
Installed DataAPI ───────────────────── v1.3.0
Installed DataStructures ────────────── v0.17.15
Installed HTTP ──────────────────────── v0.8.14
Installed DataValueInterfaces ───────── v1.0.0
Installed MbedTLS_jll ───────────────── v2.16.0+2
Installed InvertedIndices ───────────── v1.0.0
Installed MbedTLS ───────────────────── v1.0.2
Installed LazyJSON ──────────────────── v0.2.1
Installed JSON ──────────────────────── v0.21.0
Installed DataFrames ────────────────── v0.21.0
Updating `~/.julia/environments/v1.4/Project.toml`
[fa12694a] + GetGene v0.1.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[324d7699] + CategoricalArrays v0.8.0
[34da2185] + Compat v3.9.1
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.0
[864edb3b] + DataStructures v0.17.15
[e2d170a0] + DataValueInterfaces v1.0.0
[fa12694a] + GetGene v0.1.0
[cd3eb016] + HTTP v0.8.14
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[fc18253b] + LazyJSON v0.2.1
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.0+2
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.2.0
[69de0a69] + Parsers v1.0.3
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing GetGene
Status `/tmp/jl_POkiVp/Manifest.toml`
[324d7699] CategoricalArrays v0.8.0
[34da2185] Compat v3.9.1
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.0
[864edb3b] DataStructures v0.17.15
[e2d170a0] DataValueInterfaces v1.0.0
[fa12694a] GetGene v0.1.0
[cd3eb016] HTTP v0.8.14
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[fc18253b] LazyJSON v0.2.1
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.0+2
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.2.0
[69de0a69] Parsers v1.0.3
[2dfb63ee] PooledArrays v0.5.3
[189a3867] Reexport v0.2.0
[a2af1166] SortingAlgorithms v0.3.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
snpid match: Error During Test at /home/pkgeval/.julia/packages/GetGene/cGR7u/test/runtests.jl:25
Test threw exception
Expression: getgenes(df; idvar = "rsid") == loci
ArgumentError: rsid is not in the dataframe. Please rename
the column of rsids to `snpid` or specify the correct name using the `idvar` argument
Stacktrace:
[1] getgenes(::DataFrame; idvar::String) at /home/pkgeval/.julia/packages/GetGene/cGR7u/src/getgenes.jl:81
[2] top-level scope at /home/pkgeval/.julia/packages/GetGene/cGR7u/test/runtests.jl:25
[3] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1113
[4] top-level scope at /home/pkgeval/.julia/packages/GetGene/cGR7u/test/runtests.jl:24
Test Summary: | Pass Error Total
snpid match | 2 1 3
ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/GetGene/cGR7u/test/runtests.jl:23
ERROR: Package GetGene errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1510
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
[11] top-level scope at none:16