1.4.2-pre-58353fd273.log

Julia Version 1.4.2-pre.13
Commit 58353fd273 (2020-05-10 17:03 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
  Installed VersionParsing ────────────── v1.2.0
  Installed ScikitLearnBase ───────────── v0.5.0
  Installed HDF5Utils ─────────────────── v0.1.23
  Installed BSON ──────────────────────── v0.2.6
  Installed Parsers ───────────────────── v1.0.3
  Installed OrderedCollections ────────── v1.2.0
  Installed TextWrap ──────────────────── v1.0.1
  Installed MLSuite ───────────────────── v0.1.5
  Installed Missings ──────────────────── v0.4.3
  Installed Blosc_jll ─────────────────── v1.14.3+1
  Installed TableTraits ───────────────── v1.0.0
  Installed DataAPI ───────────────────── v1.3.0
  Installed IteratorInterfaceExtensions ─ v1.0.0
  Installed MacroTools ────────────────── v0.5.5
  Installed BinDeps ───────────────────── v1.0.1
  Installed DataValues ────────────────── v0.4.13
  Installed Zlib_jll ──────────────────── v1.2.11+9
  Installed ProgressMeter ─────────────── v1.2.0
  Installed Parameters ────────────────── v0.12.1
  Installed Compat ────────────────────── v3.9.1
  Installed URIParser ─────────────────── v0.4.1
  Installed MLSuiteBase ───────────────── v0.1.0
  Installed UnPack ────────────────────── v1.0.0
  Installed PyCall ────────────────────── v1.91.4
  Installed DataValueInterfaces ───────── v1.0.0
  Installed DataStructures ────────────── v0.17.15
  Installed TableTraitsUtils ──────────── v1.0.1
  Installed Glob ──────────────────────── v1.3.0
  Installed ArgParse ──────────────────── v1.1.0
  Installed SVMLightWriter ────────────── v0.1.1
  Installed PyCallUtils ───────────────── v0.2.2
  Installed Iconv ─────────────────────── v0.1.0
  Installed JSON ──────────────────────── v0.21.0
  Installed Lz4_jll ───────────────────── v1.9.2+0
  Installed Blosc ─────────────────────── v0.7.0
  Installed TimerOutputs ──────────────── v0.5.5
  Installed PandasLite ────────────────── v0.1.5
  Installed Conda ─────────────────────── v1.4.1
  Installed Zstd_jll ──────────────────── v1.4.4+1
  Installed HDF5_jll ──────────────────── v1.10.5+5
  Installed FillArrays ────────────────── v0.8.9
  Installed Requires ──────────────────── v1.0.1
  Installed HDF5 ──────────────────────── v0.13.2
  Installed DiskArrays ────────────────── v0.2.3
   Updating `~/.julia/environments/v1.4/Project.toml`
  [fd36aebc] + MLSuite v0.1.5
   Updating `~/.julia/environments/v1.4/Manifest.toml`
  [c7e460c6] + ArgParse v1.1.0
  [fbb218c0] + BSON v0.2.6
  [9e28174c] + BinDeps v1.0.1
  [a74b3585] + Blosc v0.7.0
  [0b7ba130] + Blosc_jll v1.14.3+1
  [34da2185] + Compat v3.9.1
  [8f4d0f93] + Conda v1.4.1
  [9a962f9c] + DataAPI v1.3.0
  [864edb3b] + DataStructures v0.17.15
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.13
  [3c3547ce] + DiskArrays v0.2.3
  [1a297f60] + FillArrays v0.8.9
  [c27321d9] + Glob v1.3.0
  [f67ccb44] + HDF5 v0.13.2
  [2ec8e600] + HDF5Utils v0.1.23
  [0234f1f7] + HDF5_jll v1.10.5+5
  [f60d2a9e] + Iconv v0.1.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [5ced341a] + Lz4_jll v1.9.2+0
  [fd36aebc] + MLSuite v0.1.5
  [d01462b0] + MLSuiteBase v0.1.0
  [1914dd2f] + MacroTools v0.5.5
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.2.0
  [f5117550] + PandasLite v0.1.5
  [d96e819e] + Parameters v0.12.1
  [69de0a69] + Parsers v1.0.3
  [92933f4c] + ProgressMeter v1.2.0
  [438e738f] + PyCall v1.91.4
  [02651160] + PyCallUtils v0.2.2
  [ae029012] + Requires v1.0.1
  [b51eda20] + SVMLightWriter v0.1.1
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [3783bdb8] + TableTraits v1.0.0
  [382cd787] + TableTraitsUtils v1.0.1
  [b718987f] + TextWrap v1.0.1
  [a759f4b9] + TimerOutputs v0.5.5
  [30578b45] + URIParser v0.4.1
  [3a884ed6] + UnPack v1.0.0
  [81def892] + VersionParsing v1.2.0
  [83775a58] + Zlib_jll v1.2.11+9
  [3161d3a3] + Zstd_jll v1.4.4+1
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
   Building Conda ─────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
   Building PyCall ────→ `~/.julia/packages/PyCall/zqDXB/deps/build.log`
   Building HDF5 ──────→ `~/.julia/packages/HDF5/pAi1D/deps/build.log`
   Building PandasLite → `~/.julia/packages/PandasLite/lAMDE/deps/build.log`
┌ Error: Error building `PandasLite`: 
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install pandas==0.23.4 tables`, ProcessExited(1)) [1]
│ 
│ Stacktrace:
│  [1] pipeline_error at ./process.jl:525 [inlined]
│  [2] run(::Cmd; wait::Bool) at ./process.jl:440
│  [3] run(::Cmd) at ./process.jl:438
│  [4] top-level scope at /home/pkgeval/.julia/packages/PandasLite/lAMDE/deps/build.jl:3
│  [5] include(::String) at ./client.jl:439
│  [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/PandasLite/lAMDE/deps/build.jl:3
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:899
   Building MLSuite ───→ `~/.julia/packages/MLSuite/SOSJc/deps/build.log`
┌ Error: Error building `MLSuite`: 
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install scikit-learn pandas h2o lightgbm xgboost unidecode pyarrow thundersvm treelite`, ProcessExited(1)) [1]
│ 
│ Stacktrace:
│  [1] pipeline_error at ./process.jl:525 [inlined]
│  [2] run(::Cmd; wait::Bool) at ./process.jl:440
│  [3] run(::Cmd) at ./process.jl:438
│  [4] top-level scope at /home/pkgeval/.julia/packages/MLSuite/SOSJc/deps/build.jl:13
│  [5] include(::String) at ./client.jl:439
│  [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/MLSuite/SOSJc/deps/build.jl:13
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:899
    Testing MLSuite
Status `/tmp/jl_dYPIaz/Manifest.toml`
  [c7e460c6] ArgParse v1.1.0
  [fbb218c0] BSON v0.2.6
  [9e28174c] BinDeps v1.0.1
  [a74b3585] Blosc v0.7.0
  [0b7ba130] Blosc_jll v1.14.3+1
  [34da2185] Compat v3.9.1
  [8f4d0f93] Conda v1.4.1
  [9a962f9c] DataAPI v1.3.0
  [864edb3b] DataStructures v0.17.15
  [e2d170a0] DataValueInterfaces v1.0.0
  [e7dc6d0d] DataValues v0.4.13
  [3c3547ce] DiskArrays v0.2.3
  [1a297f60] FillArrays v0.8.9
  [c27321d9] Glob v1.3.0
  [f67ccb44] HDF5 v0.13.2
  [2ec8e600] HDF5Utils v0.1.23
  [0234f1f7] HDF5_jll v1.10.5+5
  [f60d2a9e] Iconv v0.1.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [5ced341a] Lz4_jll v1.9.2+0
  [fd36aebc] MLSuite v0.1.5
  [d01462b0] MLSuiteBase v0.1.0
  [1914dd2f] MacroTools v0.5.5
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.2.0
  [f5117550] PandasLite v0.1.5
  [d96e819e] Parameters v0.12.1
  [69de0a69] Parsers v1.0.3
  [92933f4c] ProgressMeter v1.2.0
  [438e738f] PyCall v1.91.4
  [02651160] PyCallUtils v0.2.2
  [ae029012] Requires v1.0.1
  [b51eda20] SVMLightWriter v0.1.1
  [6e75b9c4] ScikitLearnBase v0.5.0
  [3783bdb8] TableTraits v1.0.0
  [382cd787] TableTraitsUtils v1.0.1
  [b718987f] TextWrap v1.0.1
  [a759f4b9] TimerOutputs v0.5.5
  [30578b45] URIParser v0.4.1
  [3a884ed6] UnPack v1.0.0
  [81def892] VersionParsing v1.2.0
  [83775a58] Zlib_jll v1.2.11+9
  [3161d3a3] Zstd_jll v1.4.4+1
  [2a0f44e3] Base64 
  [ade2ca70] Dates 
  [8bb1440f] DelimitedFiles 
  [8ba89e20] Distributed 
  [b77e0a4c] InteractiveUtils 
  [76f85450] LibGit2 
  [8f399da3] Libdl 
  [37e2e46d] LinearAlgebra 
  [56ddb016] Logging 
  [d6f4376e] Markdown 
  [a63ad114] Mmap 
  [44cfe95a] Pkg 
  [de0858da] Printf 
  [3fa0cd96] REPL 
  [9a3f8284] Random 
  [ea8e919c] SHA 
  [9e88b42a] Serialization 
  [1a1011a3] SharedArrays 
  [6462fe0b] Sockets 
  [2f01184e] SparseArrays 
  [10745b16] Statistics 
  [8dfed614] Test 
  [cf7118a7] UUIDs 
  [4ec0a83e] Unicode 
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:327 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:45.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:336 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:46.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:48.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:49.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:50.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:51.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:52.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:53.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/pyiterator.jl:138 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:56.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/pyiterator.jl:138 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:56.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:48.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:49.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:327 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:45.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:50.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:51.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:52.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:336 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:46.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:65 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:53.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:38 overwritten in module PandasLite at /home/pkgeval/.julia/packages/PandasLite/lAMDE/src/PandasLite.jl:117.
  ** incremental compilation may be fatally broken for this module **

ERROR: LoadError: InitError: PyError (PyImport_ImportModule

The Python package pandas could not be found by pyimport. Usually this means
that you did not install pandas in the Python version being used by PyCall.

PyCall is currently configured to use the Python version at:

/usr/bin/python3

and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the pandas module.

One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.

Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia.  As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the pandas module, you can use `pyimport_conda("pandas", PKG)`,
where PKG is the Anaconda package the contains the module pandas,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).

) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'pandas'",)

Stacktrace:
 [1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
 [2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
 [3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:693 [inlined]
 [4] __init__() at /home/pkgeval/.julia/packages/PandasLite/lAMDE/src/PandasLite.jl:18
 [5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
 [6] _require_from_serialized(::String) at ./loading.jl:748
 [7] _require(::Base.PkgId) at ./loading.jl:1039
 [8] require(::Base.PkgId) at ./loading.jl:927
 [9] require(::Module, ::Symbol) at ./loading.jl:922
 [10] include(::Module, ::String) at ./Base.jl:377
 [11] top-level scope at none:2
 [12] eval at ./boot.jl:331 [inlined]
 [13] eval(::Expr) at ./client.jl:449
 [14] top-level scope at ./none:3
during initialization of module PandasLite
in expression starting at /home/pkgeval/.julia/packages/MLSuite/SOSJc/src/MLSuite.jl:7
ERROR: LoadError: Failed to precompile MLSuite [fd36aebc-0777-11ea-1be3-eb1bdc5c01e1] to /home/pkgeval/.julia/compiled/v1.4/MLSuite/fNOFY_8TWpG.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1272
 [3] _require(::Base.PkgId) at ./loading.jl:1029
 [4] require(::Base.PkgId) at ./loading.jl:927
 [5] require(::Module, ::Symbol) at ./loading.jl:922
 [6] include(::String) at ./client.jl:439
 [7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/MLSuite/SOSJc/test/runtests.jl:1
ERROR: Package MLSuite errored during testing
Stacktrace:
 [1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:53
 [2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1510
 [3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:316
 [4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:303
 [5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
 [6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
 [7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
 [8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
 [9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
 [10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
 [11] top-level scope at none:16