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1.4.2-pre-58353fd273.log
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Julia Version 1.4.2-pre.13
Commit 58353fd273 (2020-05-10 17:03 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed NaNMath ────────────────────── v0.3.3
Installed TableTraits ────────────────── v1.0.0
Installed Arpack ─────────────────────── v0.4.0
Installed NLreg ──────────────────────── v0.2.0
Installed SpecialFunctions ───────────── v0.10.0
Installed Tables ─────────────────────── v1.0.4
Installed OrderedCollections ─────────── v1.2.0
Installed MacroTools ─────────────────── v0.5.5
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed Reexport ───────────────────── v0.2.0
Installed PDMats ─────────────────────── v0.9.12
Installed OpenBLAS_jll ───────────────── v0.3.9+4
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Missings ───────────────────── v0.4.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed DataAPI ────────────────────── v1.3.0
Installed Rmath ──────────────────────── v0.6.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed SortingAlgorithms ──────────── v0.3.1
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed DataValueInterfaces ────────── v1.0.0
Installed DiffResults ────────────────── v1.0.2
Installed StatsFuns ──────────────────── v0.9.4
Installed Zygote ─────────────────────── v0.3.4
Installed DataStructures ─────────────── v0.17.15
Installed QuadGK ─────────────────────── v2.3.1
Installed NNlib ──────────────────────── v0.6.6
Installed MKL_jll ────────────────────── v2019.0.117+2
Installed AbstractFFTs ───────────────── v0.5.0
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed FFTW ───────────────────────── v1.2.1
Installed IRTools ────────────────────── v0.2.3
Installed ZygoteRules ────────────────── v0.1.0
Installed CommonSubexpressions ───────── v0.2.0
Installed FillArrays ─────────────────── v0.8.9
Installed DiffRules ──────────────────── v1.0.1
Installed StatsBase ──────────────────── v0.31.0
Installed BinaryProvider ─────────────── v0.5.9
Installed StaticArrays ───────────────── v0.12.3
Installed ForwardDiff ────────────────── v0.10.10
Installed Distributions ──────────────── v0.19.2
Installed Requires ───────────────────── v1.0.1
Updating `~/.julia/environments/v1.4/Project.toml`
[6aa54777] + NLreg v0.2.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[b99e7846] + BinaryProvider v0.5.9
[bbf7d656] + CommonSubexpressions v0.2.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.15
[e2d170a0] + DataValueInterfaces v1.0.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[31c24e10] + Distributions v0.19.2
[7a1cc6ca] + FFTW v1.2.1
[f5851436] + FFTW_jll v3.3.9+5
[1a297f60] + FillArrays v0.8.9
[f6369f11] + ForwardDiff v0.10.10
[7869d1d1] + IRTools v0.2.3
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[82899510] + IteratorInterfaceExtensions v1.0.0
[856f044c] + MKL_jll v2019.0.117+2
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[6aa54777] + NLreg v0.2.0
[872c559c] + NNlib v0.6.6
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.9+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.2.0
[90014a1f] + PDMats v0.9.12
[1fd47b50] + QuadGK v2.3.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.0
[90137ffa] + StaticArrays v0.12.3
[2913bbd2] + StatsBase v0.31.0
[4c63d2b9] + StatsFuns v0.9.4
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[e88e6eb3] + Zygote v0.3.4
[700de1a5] + ZygoteRules v0.1.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building NNlib → `~/.julia/packages/NNlib/FAI3o/deps/build.log`
Building FFTW ─→ `~/.julia/packages/FFTW/5DZuu/deps/build.log`
Testing NLreg
Status `/tmp/jl_ZgOFSY/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[b99e7846] BinaryProvider v0.5.9
[336ed68f] CSV v0.6.2
[324d7699] CategoricalArrays v0.8.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v3.9.1
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.0
[864edb3b] DataStructures v0.17.15
[e2d170a0] DataValueInterfaces v1.0.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[31c24e10] Distributions v0.19.2
[7a1cc6ca] FFTW v1.2.1
[f5851436] FFTW_jll v3.3.9+5
[48062228] FilePathsBase v0.8.0
[1a297f60] FillArrays v0.8.9
[f6369f11] ForwardDiff v0.10.10
[7869d1d1] IRTools v0.2.3
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[856f044c] MKL_jll v2019.0.117+2
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[6aa54777] NLreg v0.2.0
[872c559c] NNlib v0.6.6
[77ba4419] NaNMath v0.3.3
[4536629a] OpenBLAS_jll v0.3.9+4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.2.0
[90014a1f] PDMats v0.9.12
[69de0a69] Parsers v1.0.3
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.3.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+0
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.3
[2913bbd2] StatsBase v0.31.0
[4c63d2b9] StatsFuns v0.9.4
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[ea10d353] WeakRefStrings v0.6.2
[e88e6eb3] Zygote v0.3.4
[700de1a5] ZygoteRules v0.1.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Deprecated syntax `(;)` at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/lib/grad.jl:3.
│ Use `begin end` instead.
└ @ ~/.julia/packages/Zygote/bdE6T/src/lib/grad.jl:3
Test Summary: | Pass Total
orange | 1 1
Theophylline: Error During Test at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:13
Got exception outside of a @test
Non-differentiable function Core._apply_iterate
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0 [inlined]
[3] (::typeof(∂(_apply_iterate)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:19
[4] * at ./operators.jl:529 [inlined]
[5] (::typeof(∂(*)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0
[6] sdOral1Clog at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:20 [inlined]
[7] (::typeof(∂(sdOral1Clog)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0
[8] #1 at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:48 [inlined]
[9] (::typeof(∂(λ)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0
[10] (::Zygote.var"#30#31"{typeof(∂(λ))})(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface.jl:38
[11] gradient(::Function, ::NamedTuple{(:lk, :lka, :lV),Tuple{Float64,Float64,Float64}}) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface.jl:47
[12] updatech!(::NLregModel{Float64}) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:48
[13] fit!(::NLregModel{Float64}; maxiter::Int64, tol::Float64, minfac::Float64, verbose::Bool) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:66
[14] fit(::Type{NLregModel}, ::SubDataFrame{DataFrame,DataFrames.Index,Array{Int64,1}}, ::Symbol, ::Function, ::NamedTuple{(:lk, :lka, :lV),Tuple{Float64,Float64,Float64}}; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:108
[15] fit(::Type{NLregModel}, ::SubDataFrame{DataFrame,DataFrames.Index,Array{Int64,1}}, ::Symbol, ::Function, ::NamedTuple{(:lk, :lka, :lV),Tuple{Float64,Float64,Float64}}) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:108
[16] top-level scope at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:22
[17] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1113
[18] top-level scope at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:14
[19] include(::String) at ./client.jl:439
[20] top-level scope at none:6
[21] eval(::Module, ::Any) at ./boot.jl:331
[22] exec_options(::Base.JLOptions) at ./client.jl:264
[23] _start() at ./client.jl:484
Test Summary: | Error Total
Theophylline | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:13
ERROR: Package NLreg errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1510
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
[11] top-level scope at none:16