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1.4.2-pre-58353fd273.log
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Julia Version 1.4.2-pre.13
Commit 58353fd273 (2020-05-10 17:03 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed EllipsisNotation ───────────── v0.4.0
Installed MappedArrays ───────────────── v0.2.2
Installed MosaicViews ────────────────── v0.2.2
Installed AxisArrays ─────────────────── v0.4.3
Installed ColorVectorSpace ───────────── v0.8.5
Installed SpecialFunctions ───────────── v0.10.0
Installed OrderedCollections ─────────── v1.2.0
Installed Parsers ────────────────────── v1.0.3
Installed NaNMath ────────────────────── v0.3.3
Installed DataAPI ────────────────────── v1.3.0
Installed Reexport ───────────────────── v0.2.0
Installed MacroTools ─────────────────── v0.5.5
Installed ImageShow ──────────────────── v0.2.3
Installed IntervalSets ───────────────── v0.5.0
Installed Missings ───────────────────── v0.4.3
Installed DocStringExtensions ────────── v0.8.1
Installed ImageMetadata ──────────────── v0.9.1
Installed Zlib_jll ───────────────────── v1.2.11+9
Installed FileIO ─────────────────────── v1.3.0
Installed IterTools ──────────────────── v1.3.0
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed SortingAlgorithms ──────────── v0.3.1
Installed ImageCore ──────────────────── v0.8.14
Installed PaddedViews ────────────────── v0.5.5
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed XML2_jll ───────────────────── v2.9.9+4
Installed DataStructures ─────────────── v0.17.15
Installed ColorTypes ─────────────────── v0.10.3
Installed EzXML ──────────────────────── v1.1.0
Installed ImageAxes ──────────────────── v0.6.4
Installed SimpleTraits ───────────────── v0.9.2
Installed JSON ───────────────────────── v0.21.0
Installed IndirectArrays ─────────────── v0.5.1
Installed Libiconv_jll ───────────────── v1.16.0+2
Installed Graphics ───────────────────── v1.0.2
Installed FixedPointNumbers ──────────── v0.8.0
Installed Unitful ────────────────────── v1.2.0
Installed RangeArrays ────────────────── v0.3.2
Installed Colors ─────────────────────── v0.12.0
Installed StatsBase ──────────────────── v0.33.0
Installed ConstructionBase ───────────── v1.0.0
Installed Requires ───────────────────── v1.0.1
Installed OffsetArrays ───────────────── v1.0.4
Installed OMETIFF ────────────────────── v0.3.7
Updating `~/.julia/environments/v1.4/Project.toml`
[2d0ec36b] + OMETIFF v0.3.7
Updating `~/.julia/environments/v1.4/Manifest.toml`
[39de3d68] + AxisArrays v0.4.3
[3da002f7] + ColorTypes v0.10.3
[c3611d14] + ColorVectorSpace v0.8.5
[5ae59095] + Colors v0.12.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[187b0558] + ConstructionBase v1.0.0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.15
[ffbed154] + DocStringExtensions v0.8.1
[da5c29d0] + EllipsisNotation v0.4.0
[8f5d6c58] + EzXML v1.1.0
[5789e2e9] + FileIO v1.3.0
[53c48c17] + FixedPointNumbers v0.8.0
[a2bd30eb] + Graphics v1.0.2
[2803e5a7] + ImageAxes v0.6.4
[a09fc81d] + ImageCore v0.8.14
[bc367c6b] + ImageMetadata v0.9.1
[4e3cecfd] + ImageShow v0.2.3
[9b13fd28] + IndirectArrays v0.5.1
[8197267c] + IntervalSets v0.5.0
[c8e1da08] + IterTools v1.3.0
[682c06a0] + JSON v0.21.0
[94ce4f54] + Libiconv_jll v1.16.0+2
[1914dd2f] + MacroTools v0.5.5
[dbb5928d] + MappedArrays v0.2.2
[e1d29d7a] + Missings v0.4.3
[e94cdb99] + MosaicViews v0.2.2
[77ba4419] + NaNMath v0.3.3
[2d0ec36b] + OMETIFF v0.3.7
[6fe1bfb0] + OffsetArrays v1.0.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.2.0
[5432bcbf] + PaddedViews v0.5.5
[69de0a69] + Parsers v1.0.3
[b3c3ace0] + RangeArrays v0.3.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[699a6c99] + SimpleTraits v0.9.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.0
[2913bbd2] + StatsBase v0.33.0
[1986cc42] + Unitful v1.2.0
[02c8fc9c] + XML2_jll v2.9.9+4
[83775a58] + Zlib_jll v1.2.11+9
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing OMETIFF
Status `/tmp/jl_0nz10j/Manifest.toml`
[39de3d68] AxisArrays v0.4.3
[3da002f7] ColorTypes v0.10.3
[c3611d14] ColorVectorSpace v0.8.5
[5ae59095] Colors v0.12.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[187b0558] ConstructionBase v1.0.0
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.17.15
[ffbed154] DocStringExtensions v0.8.1
[da5c29d0] EllipsisNotation v0.4.0
[8f5d6c58] EzXML v1.1.0
[5789e2e9] FileIO v1.3.0
[53c48c17] FixedPointNumbers v0.8.0
[a2bd30eb] Graphics v1.0.2
[2803e5a7] ImageAxes v0.6.4
[a09fc81d] ImageCore v0.8.14
[6218d12a] ImageMagick v1.1.5
[c73af94c] ImageMagick_jll v6.9.10-12+3
[bc367c6b] ImageMetadata v0.9.1
[4e3cecfd] ImageShow v0.2.3
[9b13fd28] IndirectArrays v0.5.1
[8197267c] IntervalSets v0.5.0
[c8e1da08] IterTools v1.3.0
[682c06a0] JSON v0.21.0
[aacddb02] JpegTurbo_jll v2.0.1+0
[94ce4f54] Libiconv_jll v1.16.0+2
[89763e89] Libtiff_jll v4.1.0+0
[1914dd2f] MacroTools v0.5.5
[dbb5928d] MappedArrays v0.2.2
[e1d29d7a] Missings v0.4.3
[e94cdb99] MosaicViews v0.2.2
[77ba4419] NaNMath v0.3.3
[2d0ec36b] OMETIFF v0.3.7
[6fe1bfb0] OffsetArrays v1.0.4
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.2.0
[5432bcbf] PaddedViews v0.5.5
[69de0a69] Parsers v1.0.3
[dca85d43] QuartzImageIO v0.6.0
[b3c3ace0] RangeArrays v0.3.2
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[699a6c99] SimpleTraits v0.9.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.0
[2913bbd2] StatsBase v0.33.0
[1986cc42] Unitful v1.2.0
[02c8fc9c] XML2_jll v2.9.9+4
[83775a58] Zlib_jll v1.2.11+9
[3161d3a3] Zstd_jll v1.4.4+1
[b53b4c65] libpng_jll v1.6.37+3
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
TiffData Layouts | 9 9
Test Summary: | Pass Total
Elapsed Time | 5 5
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
Axes Values | 2 2
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: img.data is deprecated use arraydata(img) to extract data img.
│ caller = ip:0x0
└ @ Core :-1
Test Summary: | Pass Total
Single file OME-TIFFs | 31 31
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
Multi file OME-TIFFs | 3 3
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
TIFF value verifications | 3 3
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
Loader arguments | 4 4
Error encountered while loading "testdata/nonometif.tif".
Fatal error:
Test Summary: | Pass Total
Error checks | 1 1
Test Summary: | Pass Total
OMEXML dump test | 1 1
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2016-06'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
Renaming files | 2 2
┌ Warning: ignored the empty prefix for 'http://www.openmicroscopy.org/Schemas/OME/2015-01'; expected to be non-empty
└ @ EzXML ~/.julia/packages/EzXML/ZNwhK/src/xpath.jl:85
Test Summary: | Pass Total
Issues | 1 1
Testing OMETIFF tests passed